Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3211 ATGTCTCCACAAACGCCAATTATGTCACTTTTCATCGTCCTCGCTTCATTAGTCCTGTGTAATGGCTATTACATAGGGGAACCACTTCATAAAACAAATGCTGAACACTACCCTGTGCATAATGGGAGATTGATCAAGACAAAACATGAACATTTTGGTCTTATAACAAGGGCTAATAGAGCTACCCGACTTTCTTCTAGGCCTCGTGGAACAGTTAGTGTTGATGACTTCGGAGCCAAAGCAGATGGAAGAGATGACACCGAGGCATTTGGGAAGGCATGGAATGAAGCATGTTCTAGAGGGGCTATCCTTGTGGTACCTGAAAATAGGATCTATCGTCTTAAGCCAATTACATTCTCTGGTCCATGCCATCCCAACACTGTCTTTATGCTCTATGGAACAATCGAGGCATGGACTCAAATGTCAGCATACCAAGAAGATAGACTACACTGGATCGTGTTTGATAGTGTTAACAATTTCAtagttggtggtggtggcacATTCAATGGCAATGGGAAAAAGTGGTGGCAAAACTCCTGCAAATCCCACACTGACCTTGCCGTGACTTTCTATCAATGTAACAATTTGAAAGTGACAAACCTGAGATTCAAAGATGCACAACAAATGCACGTATCCTTTGAGAGATGCTTCAATGTTATTGTTTCGAATCTCGTCATCAGAGCACCAGGGGACAGCCCCAACACTGATGGAATTCATGTGGCCGAGACACAAAATATTGTCATAAGCAACAGTGACATTGGGACAGGTGATGATTGTATTTCAATCATAAGTGGGTCCCAAAACGTTCGAGCCACAGATATCACATGCGGACCTGGACATGGAATAAGCATTGGAAGTTTAGGAGCTGATAACTCAGAAGCTGAAGTCTCCAATGTGGTAGTGAACAGAGCCACCTTAACAGGAACGACTAATGGACTGAGAATAAAGACTTGGCAGGACTCAGCTGTGCAATTAAGCAATGTGTTATACCAAAACATCAGAGGAACAAGTGCCTCAGAAGTGGCTATCAAATTTGACTGCAGCAGAGCCGTCCCTTGCAGACAAATCTACGTGCAGGATGTGATTTTAGAATCCCAAGGCAGAGGTGGTACCATAGCTACATGTGAGAATGTTAGATATGTCAACAGAGGAAAGTTTTTTCCTCAATGCACTCCTTGA 1179 0.4232 MSPQTPIMSLFIVLASLVLCNGYYIGEPLHKTNAEHYPVHNGRLIKTKHEHFGLITRANRATRLSSRPRGTVSVDDFGAKADGRDDTEAFGKAWNEACSRGAILVVPENRIYRLKPITFSGPCHPNTVFMLYGTIEAWTQMSAYQEDRLHWIVFDSVNNFIVGGGGTFNGNGKKWWQNSCKSHTDLAVTFYQCNNLKVTNLRFKDAQQMHVSFERCFNVIVSNLVIRAPGDSPNTDGIHVAETQNIVISNSDIGTGDDCISIISGSQNVRATDITCGPGHGISIGSLGADNSEAEVSNVVVNRATLTGTTNGLRIKTWQDSAVQLSNVLYQNIRGTSASEVAIKFDCSRAVPCRQIYVQDVILESQGRGGTIATCENVRYVNRGKFFPQCTP 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3211 392 ProSitePatterns Polygalacturonase active site. 273 286 IPR000743 GO:0004650|GO:0005975
Ssu3g3211 392 Pfam Glycosyl hydrolases family 28 104 333 IPR000743 GO:0004650|GO:0005975
Ssu3g3211 392 Gene3D - 57 387 IPR012334 -
Ssu3g3211 392 PANTHER POLYGALACTURONASE 320 391 - -
Ssu3g3211 392 PANTHER - 320 391 - -
Ssu3g3211 392 SMART pbh1 243 264 IPR006626 -
Ssu3g3211 392 SMART pbh1 216 242 IPR006626 -
Ssu3g3211 392 SMART pbh1 296 317 IPR006626 -
Ssu3g3211 392 PANTHER POLYGALACTURONASE 6 320 - -
Ssu3g3211 392 SUPERFAMILY Pectin lyase-like 67 391 IPR011050 -
Ssu3g3211 392 PANTHER - 6 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3211 Ssu-Chr3 88210595 88213876 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3211 30 391 Glycoside Hydrolase AT3G07970 50.485 2.14e-127 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3211 K01184 - gmx:732596 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3211 3 88210595 88213876 Ssu8g1644 8 37565616 37569404 PCT