Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3210 ATGGCTCCATCTTCTGTCACCGTCACTTCCCGCTTTCATGAATCTGTCACCCGAAATGCTCTTCGCTCCTATCTCTCCGAGTTTATCTCCACTTTCTTCTATGTCTTTGTCGTGGTTGGCTCTGGAATGTCATCTCGGAAGTTAATGCCTGATGCTTCGCTGAACCCAACAAGTCTGGTTGTGGTTGCCATTGCAAGTGCTTTTGCTTTGTCTTCTGTTCTGTATATCGCATGGGACATCTCAGGTGGACACGTCAATCCAGCCGTGACCTTTGCAATGGCAGTGGGAGGCCACATTAGTGTACCAACCGCTCTCTTTTACTGGGTTGCTCAGCTTATAGCCTCTGTTATGGCTTGCCTTGTTCTAAGGGTCATTGTTGTTGGAATGCATGTTCCAACATACACCATTGCGGAAGAGATGACAGGGTTTGGGGCATCGGTGTTGGAGGGTATCCTGACATTTGTTTTGGTGTACACTGTGTATGCAGCGAGGGACCCTAGGCGTGGCCCAACGAGTTCCATTGGCACACTTGTAGTTGGCTTAATGGCTGGGGCAAATGTCTTGGCCGCAGGTCCATTCTCTGGTGGGTCAATGAACCCTGCATGTGCTTTTGGCTCGGCTGCCATTGCAGGCAGTTTCAGGAACCAAGCAGCGTATTGGGTTGGACCCTTGATTGGTGCTGCCATAGCTGGCCTTCTTTATGACAATGTGCTGTTCCGATCTCAGCCTACAGATTCAATTAGAGGGGTTTCAGAAGGAATTGGGGTGTAG 771 0.4981 MAPSSVTVTSRFHESVTRNALRSYLSEFISTFFYVFVVVGSGMSSRKLMPDASLNPTSLVVVAIASAFALSSVLYIAWDISGGHVNPAVTFAMAVGGHISVPTALFYWVAQLIASVMACLVLRVIVVGMHVPTYTIAEEMTGFGASVLEGILTFVLVYTVYAARDPRRGPTSSIGTLVVGLMAGANVLAAGPFSGGSMNPACAFGSAAIAGSFRNQAAYWVGPLIGAAIAGLLYDNVLFRSQPTDSIRGVSEGIGV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3210 256 ProSitePatterns MIP family signature. 84 92 IPR022357 -
Ssu3g3210 256 Pfam Major intrinsic protein 17 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PANTHER AQUAPORIN-8 7 253 IPR034294 -
Ssu3g3210 256 SUPERFAMILY Aquaporin-like 12 243 IPR023271 -
Ssu3g3210 256 Gene3D Glycerol uptake facilitator protein. 5 249 IPR023271 -
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 148 166 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 103 122 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 22 41 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 180 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 66 90 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PRINTS Major intrinsic protein family signature 217 237 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3210 256 PANTHER AQUAPORIN TIP5-1-RELATED 7 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3210 Ssu-Chr3 88207276 88209276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3210 1 253 Major Intrinsic Protein MIP AT3G47440 64.427 1.13e-111 320
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3210 K09873 - gmx:100801448 459.144