Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3179 ATGAACAGCAGTGGCGGAGGGACATTGATGGGGTTCAGTAATAGTTATGGGAGGTCGCCATTCACAGTGTCTCAGTGGCAGGAACTGGAGCACCAAGCTTTGATCTTCAAGTACATGGTTGCGGGTCTTCCTGTGCCACCCGATCTCGTGCTCCCCATTCAGAAGAGCTTCGACTCTATCTCACACGGCTTCTTTCACCATCCCACATTGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGATCCAGAGCCAGGACGATGCAGGAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATATCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACAAACTATGACACACTCATCTTCAACTGTCACATCACTCACTGTCACTGGTGGCAGCAGTGGAACTGTAAACTTCCACAACCTTCCCGCAAATGCCTTTGGTAATCTCCAGGGTAGAAAGGATGCATTTCTTTCAATGCTTATCTACCGATATTCCTTATCCCTTGAACTGTGGGCAATTTTACTTGAACTAAACAGGTATCTTCAAGGACTTAAATCTGAGGGTGGTGAACATTGCTTCTTTTCTGAAGCTTCAGGAAGCAACAAGGTTCTCCAAATGGAGTCACAGCTGGAAAACACATGGCCTTTGATGTCAACCAGAGTTGCCTCTTTTTCTACATCAAAATCAAGTAATGATTCCCTGTTGCACAGTGATTACCCCCAGCATTCATTTTTATCTGGTGAATATGCATCGGGAGAACATGTGAAGGAGGAGGGCCAGCCTCTTCGaccattttttaatgaatggCCTAAAAGCAGGGAGTCGTGGTCTGGTCTGGAAGACGAGAGATCCAACCAAACAGCCTTCTCGACAACTCAACTCTCAATATCCATTCCTATGTCTTCTGACTTCTCTGCAACGAGCTCTCAGTCCCCACATGGTGAGAATGAGATTCAATTTAGGGATAACATGTATCAAAACATTGGGATTGGGATGCAGATGACGAATATTATTTCATCCTGGACAATTATCACTTGTCCCAGCTGGTGGCACACGAGGCTGGGTTGCTGTGTGGCGTGGAGGACAGGCAATGACAATAAAGGTAATAAACACACTCAAGACACTTCTAACTTGAGTGAGGAGGAGCTGAAGAAACTGGTGTGGAAATGCTTGGAGACTAAAAGCTACCTGGTGGTCATCGATGACTTGTGGAAAACCCAGGATTGGGACGAGGTGCAAGATGCTTTTCCAGACAACAGAGGTAGTAGAATATTGATCACTAGTCGTTTGAAAGAGGTGGCATTGCATACTAGTCTTCATCCTCCTTACTACCTTCAATTTCTCAGTGAAGAAGAAAGCTGGGAGCTGTTTTGGAGGAAAGTGTTTAGGGGTGAAGAGTACCCTTCTGAGTTGGAGCCTTTAGGCAAGCAGATAGTTCAAAGTTGTCGTGGTTTGCCGTTCTCAATCGTTGTGTTAGCAGGGCTGCTAGCCAACAAGGAAAAGTCATACAGAGAATGGTCTAAAGTGGTGGGTCATGTCAACTGGTATCTTACTCAGAATGAGACCCAAGTCAAGGATATAGTTCTTAAACTCAGCTACGACAACCTGCCAAGGAGATTGAAACCATGCTTTCTGTATCTTGGGATATTCCCTGAAGACTTTGAAATCCCTATTAGGCCATTACTGCAACGATGGGTTGCCGAAGGATTTATACAAGAAACAGGGAATAGAGACCCTGATGATGTGGCAGAAGACTATTTGTACGAGCTTATTGATCGTAGTTTGGTCCAAGTAGCAAGAGTGAAGACCAGTGGAGGTGTGAAAACCTGTCGCATACATGATCTTCTCCGAGATCTTTGCGTACTGGAGAGCAAAGAGGACAAGATTTTTGAAGTTTGCACAGATAATAACATTCTAATCCCAACAAAACCTCGCAGACTGTCCATCCACTGTAACACGGGGCACTACATTTCTTCTAGCAACAATGACCATTCATATTACTATTTCACTCACAACGAGTGGAATTGGCTTTTCAAAAGCTTCAAATTGGTTCGGGTGTTAGAGTTTGGAATGCAGCATTGCAGGGGAAAGATCCCTTCCAATTTGGGGAACTTTATCCACTTAAGGTACTTGAGAATAAGCTCACACAGGCCCGGGTATGTTACATTTAGAATTATTCCAACTTCTATACTTACCCTTCGGAATCTACAAACCATAGAGGTAGGTCATTTGAGGACAattctaccaatttctttccCTGCTGGAATGTGGAAGCTCAAGCATTTAAGACATTTGAATGCACATGTCATGCTACGAGGCCACTATTCAGGATCAGATGAGGTTATGTGGAATCTTCAAACCATCAAGGCCATTGTATTCGACAGACAAACATCATCTCTGATAAAGAAAGGAAGCTTCcccaatcttaaaaaattagggTTGGATATCTCTTCTGGCTGCAAAGATGAATTGTCCAAATTGTTGCAGAGCCTACAACAATTGAGTCATTTGAATGAGTTAAGGCTTGTCCTCCCAAAGAAGAGTGTTTCAAGTCCAGTGCCCTCAAACTATGATAGCATTGACGAATGGCACATTGGTTGTAAGCCACAGGAACAATTACAAAGCCTAGGGCAGTTGAGCCATCTAACTACGTTAAAAATTGACAATGCCTTGGACCTTCTAATGCGTGCAATCACATTTCCTCCAAACATTACCAAGTTAACTTTGTCAGGTATTAGGCGCATGACTGACGAGGGCATGAATGCTTTGGGAAGTCACACCAAACTCCGAATTTTGAAACTTATTGGCGAAGTAGTACTTGTGTCTTCAAATCGCTTCGACCTCACCAATTGTGTTGCAGGCGGGTTCCCACAACTGCAGGTGTTTCAAATGAAGCATTTTAATGTTGAAAACTGGAAATTAGCCAATGGTGCAATGTTATGCCTTCAAAGTCTGATCATCGATGATTGTCCAATGTTGCTTGATCTTCCAGAAGAACTGCAATCTTTGACTACGTTAAGAAAAGTGCAGGTTAGGCGACCGTCAAATTCAATGACTTTCTTTATAGGGATGAGGGAGTTGAAAATAAAGGATGGGTGTGAACTCATAGTCAACGATCACTAG 3159 0.4324 MNSSGGGTLMGFSNSYGRSPFTVSQWQELEHQALIFKYMVAGLPVPPDLVLPIQKSFDSISHGFFHHPTLSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESQTMTHSSSTVTSLTVTGGSSGTVNFHNLPANAFGNLQGRKDAFLSMLIYRYSLSLELWAILLELNRYLQGLKSEGGEHCFFSEASGSNKVLQMESQLENTWPLMSTRVASFSTSKSSNDSLLHSDYPQHSFLSGEYASGEHVKEEGQPLRPFFNEWPKSRESWSGLEDERSNQTAFSTTQLSISIPMSSDFSATSSQSPHGENEIQFRDNMYQNIGIGMQMTNIISSWTIITCPSWWHTRLGCCVAWRTGNDNKGNKHTQDTSNLSEEELKKLVWKCLETKSYLVVIDDLWKTQDWDEVQDAFPDNRGSRILITSRLKEVALHTSLHPPYYLQFLSEEESWELFWRKVFRGEEYPSELEPLGKQIVQSCRGLPFSIVVLAGLLANKEKSYREWSKVVGHVNWYLTQNETQVKDIVLKLSYDNLPRRLKPCFLYLGIFPEDFEIPIRPLLQRWVAEGFIQETGNRDPDDVAEDYLYELIDRSLVQVARVKTSGGVKTCRIHDLLRDLCVLESKEDKIFEVCTDNNILIPTKPRRLSIHCNTGHYISSSNNDHSYYYFTHNEWNWLFKSFKLVRVLEFGMQHCRGKIPSNLGNFIHLRYLRISSHRPGYVTFRIIPTSILTLRNLQTIEVGHLRTILPISFPAGMWKLKHLRHLNAHVMLRGHYSGSDEVMWNLQTIKAIVFDRQTSSLIKKGSFPNLKKLGLDISSGCKDELSKLLQSLQQLSHLNELRLVLPKKSVSSPVPSNYDSIDEWHIGCKPQEQLQSLGQLSHLTTLKIDNALDLLMRAITFPPNITKLTLSGIRRMTDEGMNALGSHTKLRILKLIGEVVLVSSNRFDLTNCVAGGFPQLQVFQMKHFNVENWKLANGAMLCLQSLIIDDCPMLLDLPEELQSLTTLRKVQVRRPSNSMTFFIGMRELKIKDGCELIVNDH 1052
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3179 1052 SMART QLQ_2 19 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu3g3179 1052 Gene3D Ribonuclease Inhibitor 878 1043 IPR032675 -
Ssu3g3179 1052 MobiDBLite consensus disorder prediction 122 137 - -
Ssu3g3179 1052 MobiDBLite consensus disorder prediction 113 137 - -
Ssu3g3179 1052 ProSiteProfiles WRC domain profile. 81 125 IPR014977 -
Ssu3g3179 1052 ProSiteProfiles QLQ domain profile. 20 55 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu3g3179 1052 Gene3D Ribonuclease Inhibitor 661 864 IPR032675 -
Ssu3g3179 1052 PANTHER GROWTH-REGULATING FACTOR 5 17 319 - -
Ssu3g3179 1052 PANTHER - 17 319 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu3g3179 1052 Gene3D - 545 635 IPR036388 -
Ssu3g3179 1052 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 388 559 IPR027417 -
Ssu3g3179 1052 Pfam QLQ 20 54 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu3g3179 1052 Pfam WRC 82 124 IPR014977 -
Ssu3g3179 1052 SUPERFAMILY L domain-like 623 1024 - -
Ssu3g3179 1052 Pfam NB-ARC domain 383 546 IPR002182 GO:0043531
Ssu3g3179 1052 Gene3D - 370 452 IPR027417 -
Ssu3g3179 1052 Gene3D - 459 544 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3179 Ssu-Chr3 87881553 87888664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3179 17 124 GRF Transcription Factor Family AT3G13960 63.393 4.98e-43 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu3g3179 NB-ARC 3e-34 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3179 - - gmx:100814688 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3179 3 87881553 87888664 Ssu3g3179 3 87881553 87888664 ECH