Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3175 ATGTATTGCTTTAATGACAGTGTTGTAGAGAGTGTTGGTGAACAAGTCACAAATCTGAAAGAAGGGGATGTGGTAATTCCAACATACATAGGCGAGTGTCAAGAATGTGAGAATTGTGTTTCAGAAGAAACCAATTTGTGTCTGACATACCCTGTAAGATGGACCGGTCTACTGCCAGATAACACTTCAAGGATGTCCATCCGAGGCCAGCAGCTATACCATGTTTTAAGTTGTGCTACATGGTCAGAGTATATGGCTGTAATTGGAGCCAAAATGCAGGGAGCATCTAGGATAATTGGAATTGACAAAaatgagaagaagagagaaaaaggagaagcTTTTGCAATGACCGACTTTATAAATCCGGCTGATTCTGATAAATCTGCTTCAGAATTGGTCAAGGAACTCACTGGTGGAATGGGTGTGGACTATTCCTTTGAGTGTACTGGAGTTTCCACTTTACTCACTGAATCCTTGGAAGCTACAAAAGTGGGAACAGGCAAAGCAATATTAATTGGTGTAGGAGCTGAAACTATTTTGCCATTGGGTGTTTTTGCCATTCTGCTTGGTAGAAATTTGAAAGGTTCTGTTTTTGGAGGCCTAAAAGCCATATCAGACCTTTCCATTGTAGTTAACAAATGCCACAAAAAGGAATTCCCTCTTCAAGAACTCTTCACCCATGAGGTCACATTGGCAGATATAAACGAAGCATTTGAGCTAGTGAAACAGCCCAATTGTGTGAAAGTAGTCATCAACATGTCATGTTAG 768 0.3919 MYCFNDSVVESVGEQVTNLKEGDVVIPTYIGECQECENCVSEETNLCLTYPVRWTGLLPDNTSRMSIRGQQLYHVLSCATWSEYMAVIGAKMQGASRIIGIDKNEKKREKGEAFAMTDFINPADSDKSASELVKELTGGMGVDYSFECTGVSTLLTESLEATKVGTGKAILIGVGAETILPLGVFAILLGRNLKGSVFGGLKAISDLSIVVNKCHKKEFPLQELFTHEVTLADINEAFELVKQPNCVKVVINMSC 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3175 255 Pfam Alcohol dehydrogenase GroES-like domain 8 83 IPR013154 -
Ssu3g3175 255 SUPERFAMILY GroES-like 8 87 IPR011032 -
Ssu3g3175 255 PANTHER ALCOHOL DEHYDROGENASE 7 86 - -
Ssu3g3175 255 Gene3D - 197 248 - -
Ssu3g3175 255 PANTHER ALCOHOL DEHYDROGENASE 86 252 - -
Ssu3g3175 255 PANTHER ALCOHOL DEHYDROGENASE-RELATED 7 86 - -
Ssu3g3175 255 Gene3D - 86 196 - -
Ssu3g3175 255 SUPERFAMILY GroES-like 205 251 IPR011032 -
Ssu3g3175 255 Pfam Zinc-binding dehydrogenase 85 200 IPR013149 -
Ssu3g3175 255 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 85 214 IPR036291 -
Ssu3g3175 255 Gene3D - 8 85 - -
Ssu3g3175 255 PANTHER ALCOHOL DEHYDROGENASE-RELATED 86 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3175 Ssu-Chr3 87819840 87821142 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3175 8 254 Monolignol Biosynthesis Gene Families AT2G21730 24.662 5.36e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3175 K00121 - gmx:100500200 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3175 3 87819840 87821142 Ssu3g3175 3 87819840 87821142 ECH