Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3171 ATGGCTGCCGCTGAAAACACCAACCCAAAGGATTATTACAAAGTGCTGGAGGTTGATTATGATGCAACTgatgaaaatatcaaattaaattaccGAAGGCTCGCACTGaAATGGCATCCTGACAAGCACGGAGGTGATAGTGCTGTTACTGCAAAATTTCAAGAGATAAATGAAGCATACAATGTATTAAGTGATCCTGCCAAGCGTTTTGACTATGATTTAACTGGGATATGTGAGATTGAAAAATATAGCTTGCAGGAATATCTTGCCAGATTTAAAGGCATGATTCTTACCTGCAATGGACTTGGTATCAATCAAACAGACAGAtgGTCACAacaattgattgaaaattttgaatcccTAGATAAATAA 372 0.336 MAAAENTNPKDYYKVLEVDYDATDENIKLNYRRLALKWHPDKHGGDSAVTAKFQEINEAYNVLSDPAKRFDYDLTGICEIEKYSLQEYLARFKGMILTCNGLGINQTDRWSQQLIENFESLDK 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3171 123 PANTHER DNAJ PROTEIN-LIKE 1 115 - -
Ssu3g3171 123 ProSiteProfiles dnaJ domain profile. 11 76 IPR001623 -
Ssu3g3171 123 SUPERFAMILY Chaperone J-domain 8 96 IPR036869 -
Ssu3g3171 123 CDD DnaJ 11 65 IPR001623 -
Ssu3g3171 123 Pfam DnaJ domain 11 73 IPR001623 -
Ssu3g3171 123 SMART dnaj_3 10 68 IPR001623 -
Ssu3g3171 123 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 1 115 - -
Ssu3g3171 123 PRINTS DnaJ domain signature 48 68 IPR001623 -
Ssu3g3171 123 PRINTS DnaJ domain signature 31 46 IPR001623 -
Ssu3g3171 123 PRINTS DnaJ domain signature 13 31 IPR001623 -
Ssu3g3171 123 Gene3D DnaJ domain 1 92 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3171 Ssu-Chr3 87760305 87808392 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3171 1 73 C2H2 Transcription Factor Family AT1G74250 41.026 6.52e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3171 - - gmx:100305987 246.128
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3171 3 87760305 87808392 Ssu3g3171 3 87760305 87808392 ECH