Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3165 ATGGGAGGTTTCAGTGAAGAAGAAGGTGTTGtgggagaaaaggaagaagaaaacaagTGGCCTTCATGGCTGCAGCCACTTCTCAAGACAAGCTTCTTTGTTCAATGCAAAGTCCACGCAGATTCCCACAAGAGCGAATGCAATATGTATTGCTTGGACTGTGTGAATGGAGCCCTTTGCTCTGCATGTCTCGCTTCCCACAAAGAACACAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTGTCTGAGATACAGAAATTTCTGGACATAGCAGGGGTCCAAACTTACATTATAAACAGTGCCAAGATTGTGTTCTTAAATGAAAGGCCCCAACCTAGGCCTGGAAAAGGGGTGACCAATACCTGCCAAGTCTGTGAGCGCAGCCTCCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTgtaagATTGTTGGAACCTCCAAAAGGTTCCGGAAGAAGAAAATGTTAGGTGAGACAGATGGATCTGATGGTGAAGAATCAGTAAATGGCATAAGCAATGGAAGTGCTAGAAACAAAATCCATAGCTTTACACCTtcaacaccaccaccaacaGTGGTTAATTACAGAAGTGCAAAGAGAAGGAAAGGAATTCCACATAGAGCTCCAATGGGTGGAGCGCttattatagaattttaa 669 0.4036 MGGFSEEEGVVGEKEEENKWPSWLQPLLKTSFFVQCKVHADSHKSECNMYCLDCVNGALCSACLASHKEHRTIQIRRSSYHDVIRVSEIQKFLDIAGVQTYIINSAKIVFLNERPQPRPGKGVTNTCQVCERSLLDSFSFCSLGCKIVGTSKRFRKKKMLGETDGSDGEESVNGISNGSARNKIHSFTPSTPPPTVVNYRSAKRRKGIPHRAPMGGALIIEF 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3165 222 Pfam PLATZ transcription factor 76 147 IPR006734 -
Ssu3g3165 222 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 217 - -
Ssu3g3165 222 MobiDBLite consensus disorder prediction 161 195 - -
Ssu3g3165 222 MobiDBLite consensus disorder prediction 169 195 - -
Ssu3g3165 222 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 9 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3165 Ssu-Chr3 87698454 87700050 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Ssu3g3165 PLATZ 5.8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3165 - - gmx:100810757 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3165 3 87698454 87700050 Ssu2g3047 2 92123864 92125741 ECH
Ssu3g3165 3 87698454 87700050 Ssu3g3165 3 87698454 87700050 ECH