Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3164 ATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAgCTGTCAATATGGAGAGAGGTGTAGATATTTACATGTACAACAACAGCGAAAATCTAATGTTCATGGGTTTGGAGGACAGAACACTTCTCATCAACAGCAAAATACAAATCCTTTTGGATTTGGGTCTGGCTCTGGCTTTGGCTCACAACAGCAGCAGAAGACTAATCCTTTTGGTTTTGGCACGCAGAACAGCTCCCAGTTAAATGGGGGCCCTCATTCTGggttcaaaccaaaccaattcaagTCTTTTGAAAACAAATGGAGTCGACAAACATCTAAACCCCAGACTGGCTTTTCACGCCAATCTGATAACAACTCCCAACAGGTGAATCATAAATGCACAGATCCTGAGACCTGCAAGCGCCAGATTGCTGAAGATTTTGAGCAAGAGAAACCGCTTTGGATACTTACGTGCTACAGTCATTGCAAAGgTGCTCCTTGTGACATTGTTGGTGATATTAGCTATGAAGAATTGCGGGCATCAGCTTACGAGGATGCTAAGCGTGGGACGAGCTTGCAATCAATAGTTGAGAAGGAGAGAAATATACTAAAATCCAAGTTGGTTGAGTTTGAGAAACTACTTTCTGAACCCTACAGAATGCCAATAAATTCTTCTCTTGACAGTCAAAAACACCAATCTGTTAGAGCCAATGCAAATCCATTTTCAGGAACTTCTCAAAATAATGGTCCTTTGTCAGTCTCAAGCTTTAGTCAACTGGGTACTTCATTGAACATGGGTTTTGAAAGGCCCTCTGCACCACTAACGAACCCTCTGGCGCAGCCTAGTTCTTGGAAGCGGAGAAATAAGTCCCAAGTGGAGAATGCATCGGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCGGGAGAGATTCCAGAAGAAGCTCCTCCCGATACCTTTGTACGGTAG 948 0.4219 MRDICRNFQRGSCQYGERCRYLHVQQQRKSNVHGFGGQNTSHQQQNTNPFGFGSGSGFGSQQQQKTNPFGFGTQNSSQLNGGPHSGFKPNQFKSFENKWSRQTSKPQTGFSRQSDNNSQQVNHKCTDPETCKRQIAEDFEQEKPLWILTCYSHCKGAPCDIVGDISYEELRASAYEDAKRGTSLQSIVEKERNILKSKLVEFEKLLSEPYRMPINSSLDSQKHQSVRANANPFSGTSQNNGPLSVSSFSQLGTSLNMGFERPSAPLTNPLAQPSSWKRRNKSQVENASGDVSIWLKEKWNPGEIPEEAPPDTFVR 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3164 315 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 3 25 IPR000571 GO:0046872
Ssu3g3164 315 MobiDBLite consensus disorder prediction 32 127 - -
Ssu3g3164 315 MobiDBLite consensus disorder prediction 259 287 - -
Ssu3g3164 315 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 59 281 - -
Ssu3g3164 315 Gene3D - 1 76 - -
Ssu3g3164 315 PANTHER MAKORIN-RELATED 278 313 IPR045072 -
Ssu3g3164 315 PANTHER MAKORIN-RELATED 2 56 IPR045072 -
Ssu3g3164 315 PANTHER MAKORIN-RELATED 59 281 IPR045072 -
Ssu3g3164 315 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 278 313 - -
Ssu3g3164 315 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 16 2 56 - -
Ssu3g3164 315 SUPERFAMILY CCCH zinc finger 3 27 IPR036855 GO:0046872
Ssu3g3164 315 MobiDBLite consensus disorder prediction 32 125 - -
Ssu3g3164 315 SMART c3hfinal6 1 25 IPR000571 GO:0046872
Ssu3g3164 315 ProSiteProfiles Zinc finger C3H1-type profile. 4 26 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu3g3164 zf-CCCH 4.4e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3164 K14321 - gmx:100814339 443.736