Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3152 ATGATGGGGAGAACACCATGCAGCGATGAAAGTGGTTTGAAGAAGGGACCTTGGACCCCAGAAGAGGATAGAATATTGGTGGATTACATTCAGAAACATGGACATGGGAGTTGGAGAGCACTTCCCAAACTTGCAGGATTGAACAGGTGTGGGAAGAGTTGCAGGCTAAGGTGGACTAACTATTTGAGGCCTGATATCAAAAGAGGAAAATTCTCGGATGAAGAAGAGCAACTCATCATCAATTTACATGCAGTTCTTGGGAATAAGTGGTCGGCTATAGCAGGTCATCTGCCAGGGAGGACTGATAATGAAATTAAGAATTTCTGGAACACTCACTTAAAGAAAAAGCTTCTGCAAATGGGGTTAGATCCAGTGACACATCGTCCAAGATCAGATCACCTTAATCTTCTATCCAATCTCCAACAGTTGCTGGCTGCTACAAACATTGTCAGTAATTTCACCAACACTTGGGACATTAATGCTCTAAGGCTGCAATCAGATGCCACAGAACTAGCCAAAATCCAATTGCTGCAGAACATACTTCAAGTCCTTGGGACCACTCCTGCCACAAACTTGGAGCTACTCAATCCTTTTGGACCATCATCTTCACTGCCAGATGGTTTTCTAAATGAAGTTTTAGGATTGAATCAGTCTAAGCTCCAAAACCTTTATAATGGTTCAACTGGTTTTCCATCTCAAAATCAGCCAAGTTTCCAAAGCTTTGAAGCCCCTCATCAGCAGCAAGCTCTACCCACTGGGTATCACCACATGAATGGAGGTGGCAATAGTAGTTGCATGAAATCTGAAAAGGTTGATGAACAACTTGATGCCCCAAATTCTTCTTCAACACCATTAAATTCTCTTCCAAATCTAGTTTCAGCCTCGCCTGAATATTCCACTGTCAAGCAAATGGAAAACAAGGTAAACCCAAATGAGTGCTCTGATCCTTCTTCCACTTCAACCACCTTTGACATGTGGGGAGATTTCATGTTTGAGGAAGTAAGCGATGCTTATTGGAAAGACCTCATGGACCAAGAGTCTAACCAGTAA 1050 0.4267 MMGRTPCSDESGLKKGPWTPEEDRILVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWSAIAGHLPGRTDNEIKNFWNTHLKKKLLQMGLDPVTHRPRSDHLNLLSNLQQLLAATNIVSNFTNTWDINALRLQSDATELAKIQLLQNILQVLGTTPATNLELLNPFGPSSSLPDGFLNEVLGLNQSKLQNLYNGSTGFPSQNQPSFQSFEAPHQQQALPTGYHHMNGGGNSSCMKSEKVDEQLDAPNSSSTPLNSLPNLVSASPEYSTVKQMENKVNPNECSDPSSTSTTFDMWGDFMFEEVSDAYWKDLMDQESNQ 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3152 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Ssu3g3152 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 346 - -
Ssu3g3152 349 Gene3D - 70 117 - -
Ssu3g3152 349 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Ssu3g3152 349 MobiDBLite consensus disorder prediction 244 291 - -
Ssu3g3152 349 MobiDBLite consensus disorder prediction 244 268 - -
Ssu3g3152 349 Gene3D - 12 68 - -
Ssu3g3152 349 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Ssu3g3152 349 PANTHER MYB TRANSCRIPTION FACTOR 4 346 - -
Ssu3g3152 349 MobiDBLite consensus disorder prediction 275 291 - -
Ssu3g3152 349 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Ssu3g3152 349 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Ssu3g3152 349 SMART sant 14 64 IPR001005 -
Ssu3g3152 349 SMART sant 67 115 IPR001005 -
Ssu3g3152 349 CDD SANT 70 113 IPR001005 -
Ssu3g3152 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Ssu3g3152 349 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Ssu3g3152 349 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3152 Ssu-Chr3 87567017 87568378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3152 2 344 MYB Transcription Factor Family AT5G16770 50.418 2.50e-107 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g3152 Myb_DNA-binding 1.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3152 K09422 - gmx:547488 597.045