Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3139 ATGTCAGAAGCAGCTACTTCTGTTGAAACTCAACGCAGCACAGAATTGTGTGGACCTAAAACCACTAGTACTACTGATGAGTTAAACGTACCAACATTAACACCCCACATTTTCACATCAAAATTACCGGACATACCCCTCCCCAACAACGTCCCCCTCCACACATACTGCTTCCTAAAACTCCCCGAAATCGCCGACCGGCCATGCCTCATCGCCGGCGACAGAACCTACACCTACGCCGACACCCACCTCTTGTCGCGAAAGGTGGCCGCCGGCATGGCCAAGCTGGGCATCCGCAAGGGCGACGCCATCATGATCCTCCTCCCCAACTCCCCGGAGTTCGTGTTCTCCTTCATGGCGGCCTCCGTGCTCGGCGCCGTCGCCACCACCGCCAACCCCTTCTACACCGCCGCCGAGATCTCCAAGCAGCTCACCGCTTCCAAGGCCAAGCTGGTCGTCACCCTCTCCGCCCACTTCCACAAGCTCGACGCTTCTGAGGGCCTCAGGGTGGTCACTGTGGACGACCCGCCGGCGAACTGCCTGCGCTTCTCGGCGGTCTCCGAGGCCGACGAGAGCGAGGTTCCGGAGGTGGAGATATCGCCGGAGGACGCGGTGGTGCTGCCGTTCTCCTCCGGGACGACGGGGCTGCCGAAGGGGGTGGTCCTGACGCACAAGAGCCTGGTGACCGGCGTGGCGCAGCAGATGGAGGGAGAGAACCCGAACGTGTTCATGAAGGAAGAGGACGTTGTGCTGTGCGTGCTTCCGCTGTTTCACATATTCTCGATGCACAGTGTCATGATGTGCGCGCTCAGAGCCGGGAGTGCGATTCTCTTGATTGACAAGTTCGAGATAAGGGCGCTACTGGAGGCGATACAGCGGCACAGGGTGTCCGTGGCAATGGTGGTGCCGCCGCTGGTGGTGGCGCTGACCAAGAACCCCGCCGTCGGGGAGTATGATCTCAGCTCCATACGGTTGCTCATGTCGGGGGCTGCGCCCCTGGGACACCAGCTGGAAGAGGCTCTGCGGAACAGGTTGCCTAACGCAGTTCTCGGACAGGGGTACGGGATGACAGAGGCTGGGCCGGTGTTGGCGATGTGTTTGGGGTTTGCAAAGCAGCCATTCCCAACGAAGGCAGGGTCATGCGGAACTGTGGTGAGAAATGCAGAGTTGAAGGTCATTGACCCTAAAACTGGTTATTCTCTTCCCCGAAACCACCCTGGCGAGATTTGCATCCGTGGCCCACAGATCATGAAAGGTTACCTGAATGATGAGAAGGCCACTGCAGCAACTATTGATGTAGATGGTTGGCTTCATACAGGTGATATTGGCTAcgtagatgatgatgatgaggttTTCCTCATTGACAGGGTGAAGGAACTCATCAAATTTAAAGGCTTCCAGGTGCCGCCAGCAGAACTTGAAGACCTTCTTATGAGCCACCCTTCCATTGCAGATGCAGCTGTTGTACCGCAAAATGACGATGCTGCGGGTGAAGTTCCAGTCGCTTTTGTGGTGAGCTTTGATCTAACAGAACAGGCTGTGAAGGATTATATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTATTTTGTTCATGCAATTCCAAAGTCTCCGACTGGAAAGATATTAAGAAAAGAACTCAGAGCAAAGTTCGCGAGCATTATTCAGAGGACCTAG 1686 0.5486 MSEAATSVETQRSTELCGPKTTSTTDELNVPTLTPHIFTSKLPDIPLPNNVPLHTYCFLKLPEIADRPCLIAGDRTYTYADTHLLSRKVAAGMAKLGIRKGDAIMILLPNSPEFVFSFMAASVLGAVATTANPFYTAAEISKQLTASKAKLVVTLSAHFHKLDASEGLRVVTVDDPPANCLRFSAVSEADESEVPEVEISPEDAVVLPFSSGTTGLPKGVVLTHKSLVTGVAQQMEGENPNVFMKEEDVVLCVLPLFHIFSMHSVMMCALRAGSAILLIDKFEIRALLEAIQRHRVSVAMVVPPLVVALTKNPAVGEYDLSSIRLLMSGAAPLGHQLEEALRNRLPNAVLGQGYGMTEAGPVLAMCLGFAKQPFPTKAGSCGTVVRNAELKVIDPKTGYSLPRNHPGEICIRGPQIMKGYLNDEKATAATIDVDGWLHTGDIGYVDDDDEVFLIDRVKELIKFKGFQVPPAELEDLLMSHPSIADAAVVPQNDDAAGEVPVAFVVSFDLTEQAVKDYIAKQVVFYKRLHKVYFVHAIPKSPTGKILRKELRAKFASIIQRT 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3139 561 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 36 553 - -
Ssu3g3139 561 Pfam AMP-binding enzyme 66 463 IPR000873 -
Ssu3g3139 561 PANTHER 4-COUMARATE--COA LIGASE 3 36 553 - -
Ssu3g3139 561 CDD 4CL 47 550 - -
Ssu3g3139 561 Pfam AMP-binding enzyme C-terminal domain 472 544 IPR025110 -
Ssu3g3139 561 ProSitePatterns Putative AMP-binding domain signature. 207 218 IPR020845 -
Ssu3g3139 561 SUPERFAMILY Acetyl-CoA synthetase-like 38 557 - -
Ssu3g3139 561 Gene3D - 458 557 IPR045851 -
Ssu3g3139 561 MobiDBLite consensus disorder prediction 1 28 - -
Ssu3g3139 561 Gene3D - 32 457 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3139 Ssu-Chr3 87365253 87371080 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3139 37 489 Monolignol Biosynthesis Gene Families AT3G21240 62.907 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3139 K01904 - gmx:100790396 921.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3139 3 87365253 87371080 Ssu3g3139 3 87365253 87371080 ECH