Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3135 ATGACAACAGTGGCAAAGGTGATGATGGTGGCGGTGATGACAACAATTGTGGTGGAAGCAACGACAGTTGTGGTGGAGGCaacgacgatggtggtggcgacgataatggtggtggtagtgatggcGAAGTGCTATTTGGGGGCACGCACAGTTGCGACTTGCGACATAGGAGTGAAAGTCAATTTTGGAGCGAAACTGCATTACGTATTCTGTGGTGGCACTGAACAAACCCCGGTGTTACTCAGATCTGCCCCTTTCCCTCCCCAATCGAGTTCGCAGATTGGTAATTTGGTTTTGCATTTTGCGTGCCCTAGCCTAGGCCTTCTTCGAATGGGAGacgaagaggaggaggaggtgcTGGGTTGCGCAACCACCGTTTCGGGCCAATCAGCCTCCACCAACAGCTTGCCACCTCCCGCCGATAACACACTCCTCAAATTGAACCATCTTGACATACACGCGGATGATGCTGGATCACACGCTTCTGTTGCtggtaagaagaaaaagagaggccAACGGGCCGTTGGACCTGATAAGAGTGGAAGAGGTCTCCGCCAATTTAGTAtgaaagTGTGTGAGAAGGTAGAAAGCAGGGGAAGAACAACTTACAATGAGgtGGCAGATGAGCTTGTTGCTGAATTTTCTGATCCAAGAAATAGTGAATTGGCTCCTGATCAGCAACAATACGACGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAACGTTCTCATGGCAATGGATATTATTTCTAAGGACAAAAAGGAAATCCAATGGAAGGGACTTCCTCATACTAGTGTGAATGATATTGAAGAACTAAAGACAGAGCGCCTTGGACTCAGGAatagaattgaaaagaaagcaGCCTATCTGCAGGAACTTGAGGAGCAATTCGTAGGTCTTCAGAACCTTATTCAAAGAAATGAGCAGTTATATAGCTCAGGAAATCCTCCCAGTGGAGGTGTGTCTTTACCTTTTATTCTGGTACAGACACGTCCTCATGCAACTGTGGAAGTGGAAATATCAGAAGATATGCAGCTTGttcattttgatttcaataGTGCTCCTTTTGAGCTGCATGACGACAATTATGTTCTCAAGGCAATGAAATTTTGTGAGAGACCACAGGATGATAATATGACACACAATCTTACTGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTGTCAGCCACAGGTTCCTACAATTATAAATGTGTCAAATAGGCCTCCAACATCACCTCCTCTCCCTGGCATATTAAAGGCAAGAGTTAAGCAAGAGCATTAA 1293 0.4138 MTTVAKVMMVAVMTTIVVEATTVVVEATTMVVATIMVVVVMAKCYLGARTVATCDIGVKVNFGAKLHYVFCGGTEQTPVLLRSAPFPPQSSSQIGNLVLHFACPSLGLLRMGDEEEEEVLGCATTVSGQSASTNSLPPPADNTLLKLNHLDIHADDAGSHASVAGKKKKRGQRAVGPDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPRNSELAPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPHTSVNDIEELKTERLGLRNRIEKKAAYLQELEEQFVGLQNLIQRNEQLYSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSAPFELHDDNYVLKAMKFCERPQDDNMTHNLTDGGEGSSMSGLCQPQVPTIINVSNRPPTSPPLPGILKARVKQEH 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3135 430 Gene3D Transcription factor DP 268 391 IPR038168 -
Ssu3g3135 430 CDD DP_DD 267 370 IPR014889 -
Ssu3g3135 430 PANTHER TRANSCRIPTION FACTOR DP 124 430 IPR015648 GO:0005667|GO:0051726
Ssu3g3135 430 SUPERFAMILY E2F-DP heterodimerization region 269 383 IPR037241 -
Ssu3g3135 430 MobiDBLite consensus disorder prediction 405 430 - -
Ssu3g3135 430 SMART DP_2 269 428 IPR014889 -
Ssu3g3135 430 Pfam E2F/DP family winged-helix DNA-binding domain 182 262 IPR003316 GO:0005667|GO:0006355
Ssu3g3135 430 Coils Coil 278 312 - -
Ssu3g3135 430 Pfam Transcription factor DP 270 384 IPR014889 -
Ssu3g3135 430 SUPERFAMILY "Winged helix" DNA-binding domain 182 263 IPR036390 -
Ssu3g3135 430 PANTHER TRANSCRIPTION FACTOR DP 124 430 - -
Ssu3g3135 430 MobiDBLite consensus disorder prediction 158 182 - -
Ssu3g3135 430 Gene3D - 175 267 IPR036388 -
Ssu3g3135 430 SMART E2F_TDP_2 179 262 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3135 Ssu-Chr3 87336894 87342873 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3135 168 380 E2F-DP Transcription Factor Family AT5G02470 52.804 1.70e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Ssu3g3135 DP 1.6e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3135 K04683 - gmx:100798342 589.726