Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3133 ATGGCTTACATGTGTGCGGACAGTGGGAACCTGATGGCGATTGCGCAGCAAGTGATCAAGCAGAAGCAGCAGCAAGAGCAGCAACAGCAGCAGCAACAACACCAACCCCAACAGCAACACCACCTCacccctctctctctccatcCAATTCCATGGAACAACACTCCCCCTCTCGGCTACCCTCTCCCTCCCACCGACTTCCCCGACCCCTTCCAACCCGATCCCCCGTTCCACTTCCCCGACCCCCACTCCGCCGCCGCCGCCCCCTTCCGCTTCTCCGACTTCGACTCCGACGACTGGATGGACACCCTCATCGGCGCCGCCGACACCCCTGCCTGGCACACCAATGCCGATTTTCCCTTCCCCTCCGATCTCAACCGCCTCATGTTCTCCTCCGACACCGCCGCCCCGCTCCTCCTCCAACCCACCCCTCCTCCGCCTCCGCCGCCGCAAGACCCCGTCAACGCCCTCTCCGAAACCGACTCCGCTCACCCGCTTCTCAAGGCCCTGACGGAGTGCGCCTCCTTCGCCGAAACCGAACCGGATCAGGCCGCCGAATCCCTCACCCGTTTAAGAAAATCCGTCTCCCAGCACGGAAACCCTACCCAGAGAGTCGCCTTCTACTTCTGCCAGGCCCTCACCCGCAAAATATGGGcccagaaagaaaaagaaaacaacaagtTCGCGATAGAGTCCACTACGGAGGAGTTGACACTCTCTTACAAAGCCCTCAACGACGCCTGCCCTTACTCCAAGTTCGCACACTTAACCGCCAACCAAGCCATCCTCGAGGCCACGGAAACCGCCTCCAACATCCACATCGTGGACTTCGGCATCGTGCAAGGGATCCAATGGGCCGCGCTCTTGCAAGCATTCGCCACTCGCTCTTCTGGCAAGCCCAATAAGATTAAAATCTCCGGCATACCCGCCATGGCTCTTGGGGCTTCCCCCGGCCCGTCTCTCTCCGCCACCGGCAACCGGCTCTCCGAGTTCGCTAAGCTTCTGGACTTGAATTTCGAGTTCACGCCTATTCTCACTCCCATACATGAACTCAACCACTCCAGCTTTTGCATTCAGCCAAACGAGGCCCTGGCGGTTAACTTCATGCTTCAGTTGTATAACCTCTTAGACGAGCCTCCAACTGCGGTCGACACTGCGCTCAGGCTGGCCAAGTCTTTAAACCCCAAGATTGTGACTCTAGGAGAGTATGAGGCCGGGTTGACACGTGTCGGGTTTCTCAGCCGGTTCAAGGCCGCGTTTAAGTATTTCTCTGCTGTGTTTGAGTCTCTGGAGCCTAACTTGGCGGCGGACTCGGCGGAGAGGTTTCAGGTGGAGAGTCTTCTGCTGGGACGACGAATTGCAGCGGTTATTGGGCCGGGGCCGGTTAGGGAGAGGATGGAGGAGAAAGAGCAGTGGAAGGTTCTGATGGAACGTGCGGGTTTCGAGTCGGTGAGTCTCAGCCATTATGCGATTAGTCAAGCTAAGTTACTTCTGTGGAATTACAGCTATAGTTCTCTGTTTTCGCTGGTTGAATCTTCACCGGGGTTTTTGTCACTGGCTTGGAAAGATGTGCCTCTCTTGACTGTGTCCTCCTGGCGTTAA 1602 0.5605 MAYMCADSGNLMAIAQQVIKQKQQQEQQQQQQQHQPQQQHHLTPLSLHPIPWNNTPPLGYPLPPTDFPDPFQPDPPFHFPDPHSAAAAPFRFSDFDSDDWMDTLIGAADTPAWHTNADFPFPSDLNRLMFSSDTAAPLLLQPTPPPPPPPQDPVNALSETDSAHPLLKALTECASFAETEPDQAAESLTRLRKSVSQHGNPTQRVAFYFCQALTRKIWAQKEKENNKFAIESTTEELTLSYKALNDACPYSKFAHLTANQAILEATETASNIHIVDFGIVQGIQWAALLQAFATRSSGKPNKIKISGIPAMALGASPGPSLSATGNRLSEFAKLLDLNFEFTPILTPIHELNHSSFCIQPNEALAVNFMLQLYNLLDEPPTAVDTALRLAKSLNPKIVTLGEYEAGLTRVGFLSRFKAAFKYFSAVFESLEPNLAADSAERFQVESLLLGRRIAAVIGPGPVRERMEEKEQWKVLMERAGFESVSLSHYAISQAKLLLWNYSYSSLFSLVESSPGFLSLAWKDVPLLTVSSWR 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3133 533 Pfam GRAS domain family 167 533 IPR005202 -
Ssu3g3133 533 Coils Coil 12 35 - -
Ssu3g3133 533 MobiDBLite consensus disorder prediction 20 58 - -
Ssu3g3133 533 ProSiteProfiles GRAS family profile. 157 533 IPR005202 -
Ssu3g3133 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 167 532 IPR005202 -
Ssu3g3133 533 PANTHER SCARECROW-LIKE PROTEIN 4-RELATED 167 532 - -
Ssu3g3133 533 MobiDBLite consensus disorder prediction 20 44 - -
Ssu3g3133 533 MobiDBLite consensus disorder prediction 137 158 - -
Ssu3g3133 533 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3133 Ssu-Chr3 87307857 87309458 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3133 1 533 GRAS Transcription Factor Family AT5G66770 58.037 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g3133 GRAS 3.2e-106 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3133 - - vra:106779206 804.283