Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3081 ATGGAGTTCGTGGGGAAAACGGTTAGGAAAGAGGTGAAGGGGGTTGGGTTTGTCTCGGGAACAGTGAAATCCTACGACCCTGCCTCTGGTTTTTTTGAGATCGTTTACGAAGACGGCGATTCTGAGGAGTTGGAGTCCTCTGATGTGGCTTCCCTTGTGCAATTTCAACCGGAGAGTGCCAAGGCCAAGCCTCGGGTTGGTCGGAAACCCAAGAAGCGCCGCCGCGTCGAGCGGAGACACGAGACCGGAGCCGGTTCAGGTAATGCTAGCGAGAACTCGGTGCCGGAGGGTAGTGATTTTAGGGGGCTTTTGCATGGGGATGTTTCCgctgatggtggtggcaatttGGAATTAGGTTgtggtgggtttgagagagcCTTGGATGTAGGAATTGGGAATGGAGGGAATCTTATGGGCAATGTGAAGGAAAACGGGGGTGGAGAAACTCCAGGAGAGGAAATTGGTTTTGATAATAGTTTGAACAAGAGTGTCTCTGCTAATGGTAGTTGGGTCAAGGATGGGCTTGATTTGAATGCTAGGCTTAATCTCAATGAGGATTTCAATCTGAATGATGCGTGTAGTTTACCTTTCGACGCTGAGGATGGTTTGAAGAGAAGAGattgttttgatttgaatttggaTGTGagtaatgatgatgatgttggccTGAATGCGGGTTATTTGGGTGGTTTGGGAGGGGGGACGTTGCAGCGGGaatgtaattttgatttgaatgtGGAGGTATGTGAAGAAGTTAAGGAAACTCAGTGTGATGCTGATGGAAATGGACATGTCGAGGTAGGTGATACTTTGTTCGGTAAGATGGGGCAGCTCCAAAAGGAAGagataaatgttaataatagtTCTGTAGAAGATGATGGTGTTCAGGGTAATTTGAATCATGTCTCTGATGCTGTCAAATTGGAGGTAATTCATGTTTCTGCTGCCCATGCAGCTAAAGATGGTTCTTTGTGTTTGCTTGAGGAAAATGGAGGTGATGATGGCAAAGAAGATGTAGCAGCTATTGATTTTCATCAGGTTTCAAATGCAATTTCTGTTAGGGATTCTGATTCTGTGGAGGTTCAGCGAATGGATTGTCCTTTTGAAGGTGGTGTTGCCATAAGTCATGAATACCAAGATGATCCAGGAAGTCCGTGCGAACAAGGAAATGGccgaaggaaaagaagaaaaatatcagATAATCCAAAAGCCACACCGGAGACAGTTTTAAGAAGGAGTTCTCGTCGGGCATTAGCTAGAAAACGGGTTTCAAGCACTGTACCAGTGGAGGTGACTGATGATCCTTTGTTGTCCTTGGGAATCAGTGCCTTAACAGAAGAAAAGCCTCTAATGCTCGATTCTCAGAAATATGAGCAATGTGATGATCCTCTTCCAAAGCTGCAATTACCCCCGTCTTCTACAAGTTTGAATTTAGATGATGTTCCTGTTCTTGaagttttttctatttatgcTTGTTTAAGATCGTTCAGTACTTTATTGTTTCTGAGTCCATTTGAGTTGGAGGATCTTGTAGCTGCACTGAAATCTGAAATCCCAAGTACATTATTTGACAGCATTCATGTTTCTATTTTGCAAACTCTGAGAAAGCATCTGGAATACCTTTCCAATGAGGGTTGCCAATCTGCAACCAATTGCCTGAGGAATCTTAACTGGGATTTTTTGGACCTGGTCACATGGCCTATTTTCATGGCCGAGTACCTTCTGATTCATGGCTCAGGATTTAAAACTGGTTTTGATCTTAAGCACCTAATATTCAGAATTGATTACTACAAACAACATGTAAATGTGAAGGTTGAAATTCTTCAGTTCCTGTGTGATGATATGATTGAATCGGAAGCCATAAGGTCCGAGCTTAACAGAAGATCTTTGGTAACTGAGACTGATATGGGTTTTGATCAGAATATGTATTTTGACACTGGCAAGAAAAGAAGAGCTGTAATGGATGTGTCTGGTGGCTCTTGCTTGACTGAGGAGAATGTGGATGATACAACTGACTGGAACAGTGATGAATGTTGCCTGTGCAAGATGGATGGTAGTTTAATATGCTGTGATGGTTGCCCTGCTGCATTCCACTCAAGATGTGTGGGAATTGCCAGTGACAATCTGCCTGAAGGTGACTGGTATTGCCCTGAGTGTGGAATTGGCAAACACAGGGCTTGGATGAAATCACGAAGGTCACTTCGAGGAGCTGACTTATTAGGGATTGATCTGGATGGCCGTCTCTATTTTAACAGCTGTGGTTACCTGTTAGTGTCAAACTCATCTGAAGCAGCGTCATTGTTCAATTACTACCACAAAAATGATCTACATGTTGTAATTGAAGCTCTAAAATCTATGGATCCTTTATACGAAGCCATACAAATGGCTATCTATAAGCATTGGGATATCCGTGCTAACTTGAGTGTGGGGGATAGTGTCTTTAATCAAAGTTCCTGCAAGAACGTGCAGATGAAGGGAGAGTATTCTACTATGCATACATCTTTAGCACCTTTTACTTCGGAGACATGTTTGGACAAGAATCGGGCTAATGATCAAAGAAAGTTGGATGAAAATTCAACTATTGACTGTTGTATGCATCTTGGCCAAGAGTTTCCAAAAGCTGGTAACCGCCTAGACTCAATGACCACCATAGAAAGTCCTTGTGTTGCTTCAGAAGGATCAGCTGATACTGCACAGACGAGAACAGGCATCAACAATGTTCAGATATATGGGCTCAATGATTCCAATAGATGTGATGAATCCTTGAATCATCCAGGAATACCAGAAAGACACCATCCTGTTGGTGACTGTTCTTTGACATCTTCCAGCTTAGATGTGGGACGTAAATTAAACTTAAGATCTGTAGGTGCTAGCAGTACCCCCTTCATAGACAATAAGGATACTTCAGAAGCACCTCATGGAATTGACTACATAAACTATTACAGCTTTGCCCGAACGGCTGCATTTGTTGCGCTGGAGTTGATGTGCAAGTCACCTGAAAAGATGAATAAGATTTTTGCAATGTCTGAAGAAGATATTATTTCAGACCAAGCAAAGAACCTGAATGCAGCTGCCCAAAAGGAAAAATGCGGATGGTGCTTTACTTGCAAAGTTGCAAATGAAGACAGAGATTGCTTGTTTAATTCTGTGGTGAAGCCTGTTTGGGAAGTGTCTAATAGTACTTTAGTTGGGCTTCAACCCAAGAAGATCCAGAATGGACATCTTAGAGATATCATATGTCTTATCTTCTCTCTTGAGTTAGAATCCAATTTGCGGCTTCTTGCACTTTCAGCAGATTGGTTAAAGCATGTGGATTCTGTTGCTACAATGGGATCTGCTACTCATATTGTGGTCAGTTCATCACGCACATCTTCAAGGCATGGTATTGGAAAGAAAAGGGCCAGGTATTCAGATATTGAAACCAGTTCATCTTCAAACACTGCCAGTGGTTTGGGGATGTACTGGTGGAGAGGTGGCAGGCTTTCCCGAAAATTGTTTAATTGTAAGGGTTTGCCTCACTCCTTGGTTGCCAAGGCTGCTAGACAAGGTGGGTGTAGGAAGATACCTGGCATTTTATATCCTGAGAATTCAGATTTTGCACGGAGAAGCAGATATGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGTGCTGAGCAGCTTGCTTTACAGgTTAGAGAGCTTTATTCTAACATAACGTGGCATGATATTGAGAACAACCATCCCCTATGTGTGTTGGACAAGGAATCTAGAAAATCGGTCAGGCTGTTCAAAAAAGCAATTGTACGCAGGAAGTGCACTGAAGGGCAATCTGTGAAATACCTTATTGATTTTGGGAAGAGAAGGGCTATTCCAGACGTTGTTATTAAACATGGTTCTTTGTTGGAACAATCCTctagtgagagaaaaaaatattggctGGAGGAGTCTTATGTTCCATTGCATTTTCTAAagaattttgaggaaaaaagaaTTGTCCGCAAGTCCACTGATAAGAAACTCGGAAAAATTCTTGAGATCGGTAGAGTAAACAAGAAAATTCCTCAACAAAGGggattttcatatttgtttacCAGATTGGAAAGATCTGATTGTCATCAGTGTGGGCACTGCAACAAAGATGTTGCAATGAGGGATGCTGTGAGGTGCCTTCATTGCAAAGgaCATTTCCACAAGAAGCATGTCAGGAAATCAGGTGGCATGAGAACTACCGGAAGCACATATTCATGTCACAGATGTCAAGATGGGTTGCATGCAAAGACTAatactaataaaagaaaagttgactCGAAACTGCAGAAGATTCAAGCTAAGAAGTGTAAAACTGTGCCTTCAGTTTGTAAATCAGTGAACCTCAAGGGCAATAAAAAGGCATTGAGTAAGATACGACAGATGAGATCTCGAAACAGTAAGAATATCCCATCAAGTGTACCTCTTCGCCGTTCTACTAGGAAGGCCAAATCCCTATATATGCAAAGTCAAATGAATGGAGGACATAAGAAAGCAAAGCAAAGTAAGAAGAATGTGGGACGTAAGAAGGGAAAGCAAAGTAAACCCAAGAAGGTGACCTCTCAGAAGTCCAAGGAAACTACTGGTCAATATAAGAAGTTGGCAGTAACTACTGCAAGCAAGAAGAGAACAAAAATCTGTAACAGTTACTGGCTTAATGGTCTTCAGTTGTCTAGAAAGCCAAATGATAAACGAGTAACAATGTTTAAAGAGAAAAAGCGTGTTGTCTCCTCTGAAGATTTTTCCAGCTCTCTTGACTGTCCTAAATGTTGCCTTTGTTGTGGAAATGGATGCACCTTGAATTACATTGCGTGTGAAATCTGTGGAGATTGGTTTCATGGTGATGCTTTTGGGCTTAATGTGGAGAATGCCAGACAACTTATTGGATTTAGGTGCCATGTTTGTCTTGATAGAACTGCACCAATCTGTCCCCATATGAAGATTAATGCATTGTCTCGCACTGAAAGTGATGCTGCCATTGAGTGTGCAGAGGAATTATCTAATCCTGCTTCTCTCCAACCATTAAGTGAGATCCCTTGCAATTAA 5055 0.4047 MEFVGKTVRKEVKGVGFVSGTVKSYDPASGFFEIVYEDGDSEELESSDVASLVQFQPESAKAKPRVGRKPKKRRRVERRHETGAGSGNASENSVPEGSDFRGLLHGDVSADGGGNLELGCGGFERALDVGIGNGGNLMGNVKENGGGETPGEEIGFDNSLNKSVSANGSWVKDGLDLNARLNLNEDFNLNDACSLPFDAEDGLKRRDCFDLNLDVSNDDDVGLNAGYLGGLGGGTLQRECNFDLNVEVCEEVKETQCDADGNGHVEVGDTLFGKMGQLQKEEINVNNSSVEDDGVQGNLNHVSDAVKLEVIHVSAAHAAKDGSLCLLEENGGDDGKEDVAAIDFHQVSNAISVRDSDSVEVQRMDCPFEGGVAISHEYQDDPGSPCEQGNGRRKRRKISDNPKATPETVLRRSSRRALARKRVSSTVPVEVTDDPLLSLGISALTEEKPLMLDSQKYEQCDDPLPKLQLPPSSTSLNLDDVPVLEVFSIYACLRSFSTLLFLSPFELEDLVAALKSEIPSTLFDSIHVSILQTLRKHLEYLSNEGCQSATNCLRNLNWDFLDLVTWPIFMAEYLLIHGSGFKTGFDLKHLIFRIDYYKQHVNVKVEILQFLCDDMIESEAIRSELNRRSLVTETDMGFDQNMYFDTGKKRRAVMDVSGGSCLTEENVDDTTDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGIASDNLPEGDWYCPECGIGKHRAWMKSRRSLRGADLLGIDLDGRLYFNSCGYLLVSNSSEAASLFNYYHKNDLHVVIEALKSMDPLYEAIQMAIYKHWDIRANLSVGDSVFNQSSCKNVQMKGEYSTMHTSLAPFTSETCLDKNRANDQRKLDENSTIDCCMHLGQEFPKAGNRLDSMTTIESPCVASEGSADTAQTRTGINNVQIYGLNDSNRCDESLNHPGIPERHHPVGDCSLTSSSLDVGRKLNLRSVGASSTPFIDNKDTSEAPHGIDYINYYSFARTAAFVALELMCKSPEKMNKIFAMSEEDIISDQAKNLNAAAQKEKCGWCFTCKVANEDRDCLFNSVVKPVWEVSNSTLVGLQPKKIQNGHLRDIICLIFSLELESNLRLLALSADWLKHVDSVATMGSATHIVVSSSRTSSRHGIGKKRARYSDIETSSSSNTASGLGMYWWRGGRLSRKLFNCKGLPHSLVAKAARQGGCRKIPGILYPENSDFARRSRYVAWRAAVEMSTSAEQLALQVRELYSNITWHDIENNHPLCVLDKESRKSVRLFKKAIVRRKCTEGQSVKYLIDFGKRRAIPDVVIKHGSLLEQSSSERKKYWLEESYVPLHFLKNFEEKRIVRKSTDKKLGKILEIGRVNKKIPQQRGFSYLFTRLERSDCHQCGHCNKDVAMRDAVRCLHCKGHFHKKHVRKSGGMRTTGSTYSCHRCQDGLHAKTNTNKRKVDSKLQKIQAKKCKTVPSVCKSVNLKGNKKALSKIRQMRSRNSKNIPSSVPLRRSTRKAKSLYMQSQMNGGHKKAKQSKKNVGRKKGKQSKPKKVTSQKSKETTGQYKKLAVTTASKKRTKICNSYWLNGLQLSRKPNDKRVTMFKEKKRVVSSEDFSSSLDCPKCCLCCGNGCTLNYIACEICGDWFHGDAFGLNVENARQLIGFRCHVCLDRTAPICPHMKINALSRTESDAAIECAEELSNPASLQPLSEIPCN 1684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3081 1684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 663 737 IPR013083 -
Ssu3g3081 1684 ProSiteProfiles DDT domain profile. 480 540 IPR018501 -
Ssu3g3081 1684 MobiDBLite consensus disorder prediction 1500 1521 - -
Ssu3g3081 1684 Pfam PHD-finger 678 719 IPR019787 -
Ssu3g3081 1684 MobiDBLite consensus disorder prediction 374 412 - -
Ssu3g3081 1684 ProSiteProfiles Zinc finger PHD-type profile. 675 722 IPR019787 -
Ssu3g3081 1684 MobiDBLite consensus disorder prediction 47 105 - -
Ssu3g3081 1684 SMART PHD_3 1367 1414 IPR001965 -
Ssu3g3081 1684 SMART PHD_3 677 720 IPR001965 -
Ssu3g3081 1684 SMART PHD_3 1593 1639 IPR001965 -
Ssu3g3081 1684 CDD PHD1_AIRE 677 719 - -
Ssu3g3081 1684 SMART testlast3 480 540 IPR018501 -
Ssu3g3081 1684 MobiDBLite consensus disorder prediction 1465 1499 - -
Ssu3g3081 1684 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 601 626 IPR028942 -
Ssu3g3081 1684 SUPERFAMILY FYVE/PHD zinc finger 1580 1641 IPR011011 -
Ssu3g3081 1684 MobiDBLite consensus disorder prediction 1462 1530 - -
Ssu3g3081 1684 PANTHER PHD FINGER FAMILY PROTEIN 1 1086 - -
Ssu3g3081 1684 PANTHER PHD FINGER FAMILY PROTEIN 1085 1656 - -
Ssu3g3081 1684 ProSitePatterns Zinc finger PHD-type signature. 678 719 IPR019786 -
Ssu3g3081 1684 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1 1086 - -
Ssu3g3081 1684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1558 1644 IPR013083 -
Ssu3g3081 1684 SUPERFAMILY FYVE/PHD zinc finger 662 720 IPR011011 -
Ssu3g3081 1684 Pfam DDT domain 485 536 IPR018501 -
Ssu3g3081 1684 PANTHER PHD-FINGER AND DNA BINDING DOMAIN-CONTAINING PROTEIN 1085 1656 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3081 Ssu-Chr3 86477295 86497681 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3081 1 1650 PHD Transcription Factor Family AT5G12400 40.446 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Ssu3g3081 DDT 1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3081 - - gmx:100800973 2826.58