Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3079 ATGATGTCACCTTCACCTAGCTTAGGTTCTCCCAACAATCTCTTGCTTAGAGAAATGAAATCCGAGGAAAGGGGTTTGTACTTGATCCATTTGTTGCTCACTTGTGCAAATCATGTGGCTGCTGGTAACCTTGAAAATGCAAATACCACACTCGAGCAAATTTCCTTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATCGCGGCATATTTTATGGAATCACTTGCTGATCGAATTCTTAAAACATGGCCTGGGATCCATAGAGCCCTCAACTCAACTAGAATGACCATGCTATCCGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATTTGTTCTCACAAATCAGGCCATCATTGAGGCAATGGAAGGGGAGAAAATGATTCACATAATTGATCTCAATGCTGCTGAAGCTGCTCAGTGGATTGCTCTCCTCCAAGTTTTGAGTGCGCGTCCCGAAGGCCCTCCTCATTTGAGAATCACTGGGGTTCATCAGAAAAAGGAGATTCTGGACCAGGTTGCTCATAGACTAATTGAAGAAGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAATTAGAAAATCTTGATTTTGACAAACTTCGCGTGAAAACTGGGGAGGCACTAGCAATAAGTTCTATTCTCCAATTACATTCCCTTTTGGCCTGGGATGATGAAGCCATGCAGAGAAAATCTCCTCTTCTGTTAAAAAGCTCAAATGGAATTCACCTGCAAAGAGTCCTGCCAATGAGCCAAAGCACGTTAGGTGATTTCCTTGAGAAAGATATGGTTAATGGGTATACCCCAAGTCCTGACTCAACCTCATCATCACCAGTATCCTTAACTACTTCAAATTCAATGAATATGGAGAGCTTTCTTAATGCCTTATGGGGGTTATCACCAAAGGTCATGGTTGTGACTGAACAAGACTGTAATCACAATGGTCCAACTCTGATGGATAGGCTTCTGGAAGCTCTATATTCTTATGCAGCGTTGTTTGATTGTTTGGAATCCACCGTCTCAAGAACATCATTGGAGAGATTAAGGGTGGAGAAGATGCTTTTTGGTGaggaaataaagaatattatttcatGTGAGGGATCtgaaagaaaggaaagacaTGAAAAGCTGGAAAAGTGGTTCCAGAGATTTGATCTAGCTGGGTTTGGTAACGTGTCTTTGAGCTATTTTGGTATGTTGCAAGCAAGGAGGTTCCTGCAGAGCTATGGTTGTGAAGGGTATAGAATGAGGGATGAAAATGGTTGTGTGTTAATTTGCTGGCAAGATCGGCCGATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA 1368 0.4137 MMSPSPSLGSPNNLLLREMKSEERGLYLIHLLLTCANHVAAGNLENANTTLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRMTMLSEEILVQKLFFELFPFLKVAFVLTNQAIIEAMEGEKMIHIIDLNAAEAAQWIALLQVLSARPEGPPHLRITGVHQKKEILDQVAHRLIEEAEKLDIPFQFNPVVSKLENLDFDKLRVKTGEALAISSILQLHSLLAWDDEAMQRKSPLLLKSSNGIHLQRVLPMSQSTLGDFLEKDMVNGYTPSPDSTSSSPVSLTTSNSMNMESFLNALWGLSPKVMVVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMLFGEEIKNIISCEGSERKERHEKLEKWFQRFDLAGFGNVSLSYFGMLQARRFLQSYGCEGYRMRDENGCVLICWQDRPMFSISAWRSRK 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3079 455 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 454 IPR005202 -
Ssu3g3079 455 Pfam GRAS domain family 28 452 IPR005202 -
Ssu3g3079 455 PANTHER SCARECROW-LIKE PROTEIN 3 1 454 IPR030008 GO:0003700|GO:0005634|GO:0009739
Ssu3g3079 455 ProSiteProfiles GRAS family profile. 19 452 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3079 Ssu-Chr3 86444890 86446257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3079 16 455 GRAS Transcription Factor Family AT1G50420 67.865 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g3079 GRAS 5.7e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3079 - - gmx:100814131 842.032