Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3072 ATGCTTCAAAGCTTGGTCCCGCGATCTCCCCGCAGTTCCAACCCTAACGCCATGAAAGCCAAGCGCGCCGCCGCCGACGGCGATTCCCCCGCCAACGAGCCTTCCTTCAAGCGAGCCACCTTCTCCGGCGAGAAAACCGCCGAGGACGAGCAAGCGTTCGATGCCGGACCCCACGGCGAGTCCACCGGCCTCAAACTCCTCGGCCTCCTCCTCCAATGCGCCGAGTGCGTCGCCATGGACAACCTCGACGTCGCCAACGACCTCCTCCCGGAGATCGCCGAACTCTCCTCGCCGTTCGGCACATCACCGGAGCGCGTCGGCGCGTACTTCGCGCAGGCGCTGCAGGCGCGCGTCGTCAGCTCCTGCCTCGGAACCTACTCGCCGCTGAGCACAAAATCGGTAACCCTAACTCAGTCGCAGCGAATCTTCAACGCGTTCCAATCCTACAACTCGGTTTCACCGCTGGTGAAGTTCTCGCACTTCACCGCGAACCAGGCCATCTTCCAAGCCCTAGAGGGCGAGGATCGCGTCCACATCATCGACCTCGACATCATGCAGGGACTCCAATGGCCAGGATTGTTCCACATCCTCGCCTCTCGCTCGAGAAAAATCCGCTCCATGAGAATCACCGGATTCGGATCCTCCTCGGAGCTCCTCGAATCCACCGGCCGGAGACTCGCCGATTTCGCGAGCTCGCTCGGTCTTCCGTTCGAGTTCTTCCCCGTGGAAGGCAAAATCGGGAGCGTCACGGAACTGAGTCAACTCGGCGTTCGGCCTAACGAGGCCATTGTTGTGCACTGGATGCACCACTGTTTATACGACATAACTGGGAGCGATTTAGGGACGTTGAGATTGCTGACTCAGCTTCGGCCTAAGCTGATCACGACAGTTGAGCAGGATCTGAGCCACGCGGGGAGCTTCCTGGCGCGGTTCGTGGAGGCGTTGCATTATTACAGCGCGTTGTTCGACGCGCTCGGGGACGGGTTGGGTGCGGACAGCCTGGAGAGGCACACGGTGGAGCAGCAGCTGTTGGGCTGCGAGATCAGGAACATCGTGGCCGTGGGCGGGCCCAAGAGGACGGGCGAGGTCAAGGTCGAGAGGTGGGGTGACGAGTTGAAACGGGCCCGGTTTCGGCCCGTTTCGCTCCGGGGCAACCCGGCCGCGCAGGCGAGTTTGTTGCTGGGGATGTTCCCTTGGAGAGGCTATACTCTCGTGGAAGAGAATGGTTCGCTCAAGCTTGGTTGGAAGGATCTCTCTCTGTTGATCGCCTCCGCTTGGCAACCGTCTGATTTGATTACTTACCCTGATTGA 1311 0.6072 MLQSLVPRSPRSSNPNAMKAKRAAADGDSPANEPSFKRATFSGEKTAEDEQAFDAGPHGESTGLKLLGLLLQCAECVAMDNLDVANDLLPEIAELSSPFGTSPERVGAYFAQALQARVVSSCLGTYSPLSTKSVTLTQSQRIFNAFQSYNSVSPLVKFSHFTANQAIFQALEGEDRVHIIDLDIMQGLQWPGLFHILASRSRKIRSMRITGFGSSSELLESTGRRLADFASSLGLPFEFFPVEGKIGSVTELSQLGVRPNEAIVVHWMHHCLYDITGSDLGTLRLLTQLRPKLITTVEQDLSHAGSFLARFVEALHYYSALFDALGDGLGADSLERHTVEQQLLGCEIRNIVAVGGPKRTGEVKVERWGDELKRARFRPVSLRGNPAAQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQPSDLITYPD 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3072 436 MobiDBLite consensus disorder prediction 1 16 - -
Ssu3g3072 436 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 14 428 IPR005202 -
Ssu3g3072 436 Pfam GRAS domain family 68 427 IPR005202 -
Ssu3g3072 436 MobiDBLite consensus disorder prediction 1 57 - -
Ssu3g3072 436 ProSiteProfiles GRAS family profile. 57 427 IPR005202 -
Ssu3g3072 436 PANTHER SCARECROW-LIKE PROTEIN 23 14 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3072 Ssu-Chr3 86298296 86299606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3072 18 430 GRAS Transcription Factor Family AT5G41920 66.746 0.0 531
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu3g3072 GRAS 7.1e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3072 - - gmx:100816249 796.964