Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3071 ATGGCATCCATGGAAGACATAAACATGAGTGGGGAAATTACACTTCCAGGGTTCCGATTCCACCCAACAGAAGAAGAGCTTCTCGATTTCTATCTTAAAAACATGGTTGTTGGCAAGAAACTTCGTTACGATGTCATTGGTTTGCTCAACATCTATCACCATGATCCATGGGACTTGCCtggTTTGGCAAAGGTTGGGGAAAGAGAATGGTACTTCTTCGTGCCAAGGGACAAAAAGCATGGCAGCGGGGGAAGGCCTAACCGCACCACTGAAAAGGGGTTCTGGAAAGCCACCGGTTCAGACCGGAAAATAGTGACCTTGTCTGATCCCAAGCGCATCATCGGGTTAAGGAAGACCCTGGTTTTCTATCAGGGAAGAGCTCCTAGGGGATGCAAGACCGATTGGGTCATGAATGAGTACCGTTTGCCTGACAATTGCAAATTACCTAAGGAAATCGTGTTGTGCAAGATATATCGAAAGGCAACTTCGTTGAAAGTGCTGGAGCAAAGGGCAGCActagaggaagagagagagatgaagcaAATGGTTGGTTCCCCTGCGTCCCCTCCTTCCTCCACGGACACCATGTCCTTTAGCAGCCCCCAGGAAGAGCCAAACGTGCCCCTGCCGTTGCTGCAACATGTTCTTAAGAAAGAATCTGAAACTGAAACTGAAGAAATGCTATCTGTGTCTATGTCAGTCCCAAAGCAAGAAAAAACAACGAACCAATTGGGTTTAAAAGACAACAAAACCACTTGTGGCACATCACTACAAATGCCCTTCGGGAAGGACAAGCTGCCGGACCTGCAGCTTCCCATGCTCGCGGATTGGACCCAAGATACCTTTTGGGCTCAGTTGAATAGTCCATGGCTCCAAAACTTCACTCCTACCAACATCCTAAACTTCTACTGA 912 0.4616 MASMEDINMSGEITLPGFRFHPTEEELLDFYLKNMVVGKKLRYDVIGLLNIYHHDPWDLPGLAKVGEREWYFFVPRDKKHGSGGRPNRTTEKGFWKATGSDRKIVTLSDPKRIIGLRKTLVFYQGRAPRGCKTDWVMNEYRLPDNCKLPKEIVLCKIYRKATSLKVLEQRAALEEEREMKQMVGSPASPPSSTDTMSFSSPQEEPNVPLPLLQHVLKKESETETEEMLSVSMSVPKQEKTTNQLGLKDNKTTCGTSLQMPFGKDKLPDLQLPMLADWTQDTFWAQLNSPWLQNFTPTNILNFY 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3071 303 Pfam No apical meristem (NAM) protein 16 142 IPR003441 GO:0003677|GO:0006355
Ssu3g3071 303 SUPERFAMILY NAC domain 9 160 IPR036093 GO:0003677|GO:0006355
Ssu3g3071 303 ProSiteProfiles NAC domain profile. 14 160 IPR003441 GO:0003677|GO:0006355
Ssu3g3071 303 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Ssu3g3071 303 PANTHER NAC TRANSCRIPTION FACTOR 29-LIKE 6 302 - -
Ssu3g3071 303 MobiDBLite consensus disorder prediction 176 205 - -
Ssu3g3071 303 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 6 302 - -
Ssu3g3071 303 MobiDBLite consensus disorder prediction 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3071 Ssu-Chr3 86276771 86278498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3071 9 303 NAC Transcription Factor Family AT2G17040 58.054 6.24e-114 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu3g3071 NAM 5.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3071 - - gmx:100816770 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3071 3 86276771 86278498 Ssu3g3071 3 86276771 86278498 ECH