Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3069 ATGATCAGCGCAAAAAGGCTTATCGAAATGGCAAGAAAGTGGCAGAAAATGGCAGCTGAAAAACGCAAGAGAATTTCATACCCAAGGCACCATGTTGGTATGATGCCCGCAAACAAGGGCCACTTCGTCGTTTACAGCGTCGATCATAAGCGATTCGTGGTTCCCCTCAAGTACCTTAGCACGAACGTGTTCAGGGAGCTACTCAAGTGGTCCGAAGAGGAGTTTGGGTTACCGTCCAATGGACCTATTACGTTACCTTGTGACAGCGTCTTCTTGGACTACGTAATCTCGTTAGTTCGAGAACGCATCCCCGAAGATGTGGAGAAGGCTTTGATCACTTCAATGGTTGCATGTCACCACGAGGCATCATCTTCTTCGAATGCTCTTAGGCAGAGCAACGGGCAAATGATTATTTATGGCTTTTGA 426 0.4718 MISAKRLIEMARKWQKMAAEKRKRISYPRHHVGMMPANKGHFVVYSVDHKRFVVPLKYLSTNVFRELLKWSEEEFGLPSNGPITLPCDSVFLDYVISLVRERIPEDVEKALITSMVACHHEASSSSNALRQSNGQMIIYGF 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3069 141 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 141 IPR003676 GO:0009733
Ssu3g3069 141 PANTHER SAUR-LIKE AUXIN-RESPONSIVE FAMILY PROTEIN 1 141 - -
Ssu3g3069 141 Pfam Auxin responsive protein 12 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3069 Ssu-Chr3 86231239 86231664 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3069 3 99 Calmodulin-binding Proteins AT4G34750 30.769 6.88e-11 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3069 - - ccaj:109798531 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3069 3 86231239 86231664 Ssu3g3069 3 86231239 86231664 ECH