Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3065 ATGGAAGCTATATTTGTCACCAAACCAGCTTCTCACCTCAAAACTAAACTCTCTCCAAACTCCAAACACCTCTTCCCTCCCCACCAACACCAACAATCCTTCCTCTCCATCCGCCACAAACCCACCCACTTCCCCGCCGTCACCGCCGcactccaaaaccaacaacaacaagcAGCACCGAAAGACACCGAAGATGAGTCCTACGGCGAAGTCAAAGGCATCATCGGCAGCAGAGCCCTCGACGGCGCCGCCGGCATGGAGTACCTCATCGAGTGGAAAGACGGCCACGCGCCGTCCTGGGTCCCCGCCGACTTCATCGCCAAAGACGTCGTCGCCGAGTTCGAGACCCCCTGGTGGACCGCCGCCAAGAAAGCCGACGAGTCTGCGCTGAAGAACCTCATCGACTCCGGCGACGGCCGCGACGTCGACGCCGTGGACGCCGACGGCCGCACCGCGCTCCTCTTCGTCGCGGGCCTTGGCTCGGAGCCCTGCGTGAAGCTCCTGGCGGAGGCCGGCGCGAATCTGGACCACCGCGACCGGAGCGGCGGCCTGGCGGCGCTGCACATGGCGGCGGGGTACGTGCACCCCGGCGTGGCGAAGCTGCTGTTGGACCTCGGCGCGGATCCCGAGGCGGCGGACGACCGCGGGAGGACGCCGCTGGATCTGGCGAGGGAGATTCTGAAGGTGACGCCGAAGGGGAACCCGATGCAGTTCGGGCGCAGGATTGGGTTGGAGGGCGTGATTAGGGTTTTGGAAGGGGCGGTGTTCGAGTACGCGGCGGTGCAGGAGATTATGGAGCGGAGGGGGAAGGGTGAGAATCTGGAGTACCTTGTGAGGTGGAAGGACGGCGGTGCCAATGAGTGGGTGAAGGCCAAGTTTGTGGCGGAGGATTTGGTCAGAGACTACGAGGCTGGCCTCGAGTACGCCGTCGCCGAGGCGGTGGTTGGTCGCAGGGTCGGGGATGAAGGCACGCCGGAGTTCTTGGTCAAATGGGCCGATTTGGATGAGCCCACGTGGGAGCCCCAAGGGAATGTGGACCCTGAGCTTGTCAGAGTGTTTGAGGAAAGTAGCAACCAAGCCCAGCCCAGTAGTAATGGGCCTGCCGTTCTCGTTTCCAATCAGGATTGCCCTTGA 1134 0.619 MEAIFVTKPASHLKTKLSPNSKHLFPPHQHQQSFLSIRHKPTHFPAVTAALQNQQQQAAPKDTEDESYGEVKGIIGSRALDGAAGMEYLIEWKDGHAPSWVPADFIAKDVVAEFETPWWTAAKKADESALKNLIDSGDGRDVDAVDADGRTALLFVAGLGSEPCVKLLAEAGANLDHRDRSGGLAALHMAAGYVHPGVAKLLLDLGADPEAADDRGRTPLDLAREILKVTPKGNPMQFGRRIGLEGVIRVLEGAVFEYAAVQEIMERRGKGENLEYLVRWKDGGANEWVKAKFVAEDLVRDYEAGLEYAVAEAVVGRRVGDEGTPEFLVKWADLDEPTWEPQGNVDPELVRVFEESSNQAQPSSNGPAVLVSNQDCP 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3065 377 MobiDBLite consensus disorder prediction 352 377 - -
Ssu3g3065 377 Gene3D - 305 356 - -
Ssu3g3065 377 Pfam Chromo (CHRromatin Organisation MOdifier) domain 311 355 IPR023780 -
Ssu3g3065 377 PANTHER HOMEOBOX PROTEIN WARIAI 1 360 - -
Ssu3g3065 377 ProSiteProfiles Ankyrin repeat region circular profile. 182 214 - -
Ssu3g3065 377 SUPERFAMILY Ankyrin repeat 115 225 IPR036770 -
Ssu3g3065 377 Gene3D - 65 112 - -
Ssu3g3065 377 Gene3D - 255 304 - -
Ssu3g3065 377 SUPERFAMILY Chromo domain-like 64 118 IPR016197 -
Ssu3g3065 377 ProSiteProfiles Ankyrin repeat region circular profile. 148 180 - -
Ssu3g3065 377 SMART chromo_7 257 307 IPR000953 -
Ssu3g3065 377 SMART chromo_7 67 119 IPR000953 -
Ssu3g3065 377 SMART chromo_7 308 358 IPR000953 -
Ssu3g3065 377 PANTHER SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTIC 1 360 IPR030300 GO:0009416|GO:0009507|GO:0045038|GO:0080085
Ssu3g3065 377 SMART ANK_2a 113 144 IPR002110 GO:0005515
Ssu3g3065 377 SMART ANK_2a 148 177 IPR002110 GO:0005515
Ssu3g3065 377 SMART ANK_2a 182 211 IPR002110 GO:0005515
Ssu3g3065 377 MobiDBLite consensus disorder prediction 354 377 - -
Ssu3g3065 377 ProSiteProfiles Ankyrin repeat profile. 182 214 IPR002110 GO:0005515
Ssu3g3065 377 CDD CD3_cpSRP43_like 306 354 - -
Ssu3g3065 377 Gene3D - 113 254 IPR036770 -
Ssu3g3065 377 SUPERFAMILY Chromo domain-like 257 304 IPR016197 -
Ssu3g3065 377 ProSiteProfiles Ankyrin repeat profile. 148 180 IPR002110 GO:0005515
Ssu3g3065 377 Pfam Ankyrin repeats (many copies) 168 223 IPR002110 GO:0005515
Ssu3g3065 377 ProSiteProfiles Chromo and chromo shadow domain profile. 309 365 IPR000953 -
Ssu3g3065 377 SUPERFAMILY Chromo domain-like 307 356 IPR016197 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3065 121 226 MAP Kinase Kinase Kinase AT2G31800 37.963 1.01e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3065 K12271 - gmx:100818382 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g3065 3 86181529 86182662 Ssu3g3065 3 86181529 86182662 ECH