Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3061 ATGGATGAGCAATTTTCAATGCCCGTTCACAGTCGTGAGCCAATGCCTAGGGGCTTAGCTCACAAAAAGTCTTCAGGGCCCAAATTTCTTGCCTCCATAGGTGCCCACGAATTTTTCACAATAGAGACGTGGAAAGCAGCTTTGGTAGAGTTAACTGCAACTGCTGCACTATTGTTTACCCTAACGAGTTCCATTATTGCATGTTTGGAGTCACACGAGGTCAATCCCAAGTTTCTTATTCCCTTTGCAGTCTTCATCATAGCCTTCTTGTTTCTAATTGTTACAGTTCCTCTATCTGGGGGTCATATGAACCCCGTTTTCACATTCACTGCGGCTTTAAAGGGTGTTGTGACCCTTTCTCGTGCTATCCTTTACGTGTTAGCACAATGCATTGGCTCAATTCTTGGTTTCTTCATACTTAAGAGTGTGATGGAGCCAAAATTAGCTGATACATATTCTTTGGGAGGTTGTGCCATTGGTGACAAAGGACCAATTTCTGGTATAAAGCCACAAGATGCTTTGTTATTAGAATTCACTTGCACATTTTTAGTACTCTTTTTGGGTCTAACGTTGGCATTTGATAAGAAAAGGTGCAAGGAATTGGGCTTGCCAATGGTTTGCTTGGTGGTAGCAGCATCCATGGCACTGGCAGTGTTTGTGTCCATAACTGTAACTGGGCGGCCTGGTTATGCAGGTGTGGGCCTGAGCCCGGCAAGATGCCTAGGCCCAGCGTTGCTTCATGGAGGCTCACTATGGAATGGCCATTGGATTTTCTGGCTTGGGCCTTTCTTGGCCTGCATAATCTATTATAGTGTCTCCATCAACCTACCAACGAAGGGTGTAGATTGGGTAGATGGAGAATATGATATCTTAAAATTGGCTCTGGGTTCTTGCGGGGCTCTTTCTAACAATGCCATTAGAAATGATCTTCCTTGA 936 0.4455 MDEQFSMPVHSREPMPRGLAHKKSSGPKFLASIGAHEFFTIETWKAALVELTATAALLFTLTSSIIACLESHEVNPKFLIPFAVFIIAFLFLIVTVPLSGGHMNPVFTFTAALKGVVTLSRAILYVLAQCIGSILGFFILKSVMEPKLADTYSLGGCAIGDKGPISGIKPQDALLLEFTCTFLVLFLGLTLAFDKKRCKELGLPMVCLVVAASMALAVFVSITVTGRPGYAGVGLSPARCLGPALLHGGSLWNGHWIFWLGPFLACIIYYSVSINLPTKGVDWVDGEYDILKLALGSCGALSNNAIRNDLP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3061 311 PANTHER AQUAPORIN-LIKE 19 306 - -
Ssu3g3061 311 SUPERFAMILY Aquaporin-like 43 268 IPR023271 -
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 45 64 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 256 276 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PRINTS Major intrinsic protein family signature 217 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3061 311 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 19 306 - -
Ssu3g3061 311 Gene3D Glycerol uptake facilitator protein. 30 276 IPR023271 -
Ssu3g3061 311 MobiDBLite consensus disorder prediction 1 22 - -
Ssu3g3061 311 Pfam Major intrinsic protein 40 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3061 Ssu-Chr3 86111578 86112716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3061 16 268 Major Intrinsic Protein MIP AT2G37170 26.136 6.14e-23 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3061 K09866 - gmx:100797262 510.76