Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3060 ATGGAACCCGCCAATTCCCAAATTGTTGATAATACTGATGAACAATTTCCGAGGCTACTTCAAAGTCATGAGGTAAGGTGTTTGGTTCGTAAGAAGCCTTTAGGGCCCAAACTTCTTGCCTCAATCGGTGCCCATGAAATTTACACAGTAGAGATGTGGAAAGCAGCACTAACAGAATTAACAGCAACTGCCTCTCTAATGTTCACCTTGACGACTTCCATTATTGCATGCTTGGATTCACATGAGGTCGATCCTAAGCTTCTTGTTCCCTTTGCGGTCTTCATCATAGCCTTTTTGTTCCTCGTTGTGACCGTTCCTCTCACGGGGGGTCATATGAGTCCTGTTTTCACATTCATTGCTGCTTTAAAGGGTGTTGTGACTCTTACCCGTGCTCTCATTTACGTGTTAGCGCAATGCATTGGCTCAATAATTGGTTTCTTTGTACTAAAGTGTGTCATAGAGCCCAGATTAGCTTATACATATTCCTTGGGAGGTTGTGCCATCGGTGGCAAAGGAGTAAATTCTGGTATAAAGCCACTGGATGCTTTGTTAGTGGAATTCACTTGCACATTTGTGGTACTCTTTGTGGGTGTCACATTGGCATTTGACAAGAAAAGGTCCAAGGATTTGGGCTTGCCAATGGTTTGCTTGGTGGTAGCAGGAGCCATGGCATTAGCAGTGTTTGTGTCCATAACTGTAACTGGGCGGGCTGGTTATGCAGGTGTGGGCCTGAACCCAGCAAGATGCTTAGGCCCAGCATTGTTTCATGGAGGCTCGCTATGGAAAGGGCATTGGGTTTTTTGGCTTGGGCCTTTCTTGGCATGTGTAGTCTATTATGCTGTGTCTATCAACCTACCAAAGGAGGGTCTGGTTTGGGTGGATGGAGAATATGATGTCTTAAAGTTGGCTCTTGGTTCTTGTGGGACTGTCTATAATACTTCCGTTCCAAATGATCTACCAGAAGAACGCAATGCAGGGTACCAAGTCCAAGTATGA 996 0.4518 MEPANSQIVDNTDEQFPRLLQSHEVRCLVRKKPLGPKLLASIGAHEIYTVEMWKAALTELTATASLMFTLTTSIIACLDSHEVDPKLLVPFAVFIIAFLFLVVTVPLTGGHMSPVFTFIAALKGVVTLTRALIYVLAQCIGSIIGFFVLKCVIEPRLAYTYSLGGCAIGGKGVNSGIKPLDALLVEFTCTFVVLFVGVTLAFDKKRSKDLGLPMVCLVVAGAMALAVFVSITVTGRAGYAGVGLNPARCLGPALFHGGSLWKGHWVFWLGPFLACVVYYAVSINLPKEGLVWVDGEYDVLKLALGSCGTVYNTSVPNDLPEERNAGYQVQV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3060 331 Pfam Major intrinsic protein 47 274 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PANTHER AQUAPORIN-LIKE 22 315 - -
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 265 285 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 185 203 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 130 149 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 93 117 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 54 73 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Ssu3g3060 331 SUPERFAMILY Aquaporin-like 50 278 IPR023271 -
Ssu3g3060 331 Gene3D Glycerol uptake facilitator protein. 39 287 IPR023271 -
Ssu3g3060 331 PANTHER MAJOR INTRINSIC PROTEIN (MIP) FAMILY TRANSPORTER 22 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3060 Ssu-Chr3 86093845 86094970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3060 46 277 Major Intrinsic Protein MIP AT3G61430 29.046 1.01e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3060 K09866 - gmx:100804160 539.265