Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3052 ATGGATTGTCCAGCTGCAAGGACACAAAAGGCTGACAGAGAAAAGCTAAGAAGGGATCGACTCAATGACCAGTTTGTAGAACTGGGCAACATTATAGACCCTGATAGGCCCAAAAATGACAAAGCAACCATTCTAGGTGATGCAATTCAATTGCTAAAGGACCTTACTTCTCAAGTCAGTAAACTTAAAGATGAATATGCTACACTAAATGAAGAATCTTGTGagTTGGCTCAGGAGAAAAATGATCTCAGAGAAGAGAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATAATCAGTATCAGCAACAGCTCAGGACTATATCTCCATGGACTGCAATGGATCATTCAGTAATGCTAGCTCCACCATCATATCCATATTCAGTGCCAATGCCAATACCTTCTGCTCCTATTTCCATGCAGCCATACCCCTTCCTTGCAAATCAGCCTTCTGCAATCATCCCTAACCCCTGTTCAACATTTGTTCCTTATTTAGTCCCCAATACCCTTGTTGAACAGCAATCCACCCAGCACATATCCCCACCACTTCATCCAGGTTCTGGGTCACTTGTGTCAGGAAAACAAGAGTCCAGAAACAAATCATCCAAGGAGAGCAAGGCTGAAAAACATGAGGATTCTAATGATGTCACTTCGGACCTGACTGCCGGGTCTTCTGCAGATCAGGATTTGTCATCTGGACAAAGAAAATCTAGTAAGTTATCAAGGAAGGAAAGCAATTGCCCTGAAGTGAGTTCGTTAGGTAGGAGTTCTTCGTCTTGTGGCATTCAGGATAGCTCATCAAATAGTATACTTCACGAGCACAAAAACTAG 831 0.4224 MDCPAARTQKADREKLRRDRLNDQFVELGNIIDPDRPKNDKATILGDAIQLLKDLTSQVSKLKDEYATLNEESCELAQEKNDLREEKASLKSDIEKLNNQYQQQLRTISPWTAMDHSVMLAPPSYPYSVPMPIPSAPISMQPYPFLANQPSAIIPNPCSTFVPYLVPNTLVEQQSTQHISPPLHPGSGSLVSGKQESRNKSSKESKAEKHEDSNDVTSDLTAGSSADQDLSSGQRKSSKLSRKESNCPEVSSLGRSSSSCGIQDSSSNSILHEHKN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3052 276 Coils Coil 45 107 - -
Ssu3g3052 276 Gene3D - 5 85 IPR036638 GO:0046983
Ssu3g3052 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 5 73 IPR036638 GO:0046983
Ssu3g3052 276 MobiDBLite consensus disorder prediction 244 269 - -
Ssu3g3052 276 MobiDBLite consensus disorder prediction 173 276 - -
Ssu3g3052 276 MobiDBLite consensus disorder prediction 217 235 - -
Ssu3g3052 276 SMART finulus 11 61 IPR011598 GO:0046983
Ssu3g3052 276 Pfam Helix-loop-helix DNA-binding domain 7 55 IPR011598 GO:0046983
Ssu3g3052 276 PANTHER TRANSCRIPTION FACTOR BHLH121 5 275 IPR044579 GO:0003700|GO:0055072
Ssu3g3052 276 PANTHER TRANSCRIPTION FACTOR BHLH121 5 275 - -
Ssu3g3052 276 MobiDBLite consensus disorder prediction 197 216 - -
Ssu3g3052 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 5 55 IPR011598 GO:0046983
Ssu3g3052 276 CDD bHLH_AtILR3_like 10 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3052 Ssu-Chr3 86036175 86037733 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3052 1 242 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 55.378 1.49e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu3g3052 HLH 6.1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3052 - - gmx:100817000 447.588