Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3048 ATGCCTAACCCTAAGGTTTTCTTCGACATGACCATCGGCGGCCAACCCGCTGGTCGCGTCGTGTTCGAGCTCTTCGCCGACGTGACTCCCCGCACCGCAGAGAACTTCCGCGCGCTCTGCACCGGCGAGAAGGGCGTCGGCCGGAGCGGCAAGCCCCTCCACTTCAAGGGCTCGTCCTTCCACCGCGTGATCCCGAACTTCATGTGCCAGGGCGGCGACTTCACCGCGGAAACGGTACCGGCGGCGAGTCGATCTACGGTGCGAAGTTTGCCGACGAGAACTTCGTGA 288 0.6389 MPNPKVFFDMTIGGQPAGRVVFELFADVTPRTAENFRALCTGEKGVGRSGKPLHFKGSSFHRVIPNFMCQGGDFTAETVPAASRSTVRSLPTRTS 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3048 95 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Ssu3g3048 95 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 1 78 - -
Ssu3g3048 95 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 79 IPR002130 GO:0000413|GO:0003755
Ssu3g3048 95 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 75 IPR002130 GO:0000413|GO:0003755
Ssu3g3048 95 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 78 - -
Ssu3g3048 95 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Ssu3g3048 95 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Ssu3g3048 95 Gene3D - 1 89 IPR029000 -
Ssu3g3048 95 SUPERFAMILY Cyclophilin-like 2 77 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3048 Ssu-Chr3 85949576 85949863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3048 18 76 U-box Gene Family AT5G67530 44.068 6.78e-08 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3048 K01802 - cit:102623101 155.221