Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3047 ATGGCGAACGCCGGTCCCGGAACCAACGGATCTCAGTTCTTCATCTGCACGACGAAGACGGAGTGGCTCGACGGGAAACACGTGGTGTTCGGACAGGTCGTCGAGGGATTGAATGTGGTCAAGCAGATCGAGACGGTCGGCTCCAGCTCCGGCAAGACCTCCAGGCCCGTCGTCGTTGCCGACTGCGGTCAACTCTCTTAG 201 0.602 MANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVVEGLNVVKQIETVGSSSGKTSRPVVVADCGQLS 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3047 66 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1 63 IPR002130 GO:0000413|GO:0003755
Ssu3g3047 66 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1 64 IPR002130 GO:0000413|GO:0003755
Ssu3g3047 66 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 12 24 IPR002130 GO:0000413|GO:0003755
Ssu3g3047 66 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 25 40 IPR002130 GO:0000413|GO:0003755
Ssu3g3047 66 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 66 - -
Ssu3g3047 66 Gene3D - 1 66 IPR029000 -
Ssu3g3047 66 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 66 - -
Ssu3g3047 66 SUPERFAMILY Cyclophilin-like 1 65 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3047 Ssu-Chr3 85949346 85949546 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3047 1 46 U-box Gene Family AT5G67530 52.174 4.66e-09 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3047 K01802 - gmx:106795232 127.487