Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3044 atggatgcGCCTAAAGTTGCTAGACAAGGAAGAACGAGGAAAACAAAGGCtaataaaaagggtaaatttgatttgaatgatCTACAATGGACCAGTAATATTCCAGAGTGTCCAGTATACCACCCATCAGGGCAGGAGTTTGAGGATCCTTCTGTCTATATACAAAAGATTGCTCCAGAGGCATCTAAATTTGGCATATGTAAAATCGTTTCTCCTATTGTTGCCTCTATTCCTGCTGTTGACGTCTTAACCAAAGAGAAAAAGGACTTCAAGTTTGAAACTAATGTACAGCCTCTTCGGCTTTCTGATTGGAATGAGAAAGACAAAATAACCTTTTCCATGAGGGGAAGAAACTACACGTATCATGAATTTGAGGCTCATGCAAATGAGGCTTTTCTCAGTAGATTTCACAGTTTTGGGGGGTTTTCATCTTCATATCTGGAAAAGGAGTTCTGGCGCGAGATGGCACATGGGAAAAAGGGAACAGTTGAGTATGGAATCAATATAGAGGGTAGCGCCTTTTCATGTGATCCTAATGACAAGCTTGGAAAAAGTAAATGGAATTTGAAGAATTTCTCACGGCTACCACAATCCACGTTGCGTTTAGTTGACAAGGAAATTCCAGGAATAACTGATCCTATGCTTTACATCGGGATGCTGTTCAGCATGTTTGCGTGGCATGTAGAAGATCTCTATTTGTACAGCATAAATTATCATCATTCAGGTGCAAATAAAATTTGGTATGGCGTGCCGGCTCATGCGGCTTCTCAATTTGAAAATGTTGTCTTGAATCACGTGTATTGTAACAAAATCTTATCAAAACATGGAGAGGATGGGGCTTTCGAACTTCTTGCACATAAAACAACCATGTTTCCTCCAATTATCTTGCTACAAAATGATGTGGCAGTTTACAAGGTTGTCCAGAAGGCAGGGGAGTTTGTCATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTAATGgTTTTAACTGTGGAGAAGCAGTGAATTTTGCAATTGGTGATTGGTTTCCACTGGGGGCTGCAGCTAGTAAGCGTTATGCCCATCTCAGAATGTTTCCTATAATTTCATACGaggaacttctttgtgaagagGCAATGCAGATTTACAAGTCCTTAAAAGTCACAGGCTCAAAGAACAAACCTAAGGACTTGACAGCTTATCATGCCACTGTACTGTCTTTTGTGCATCTTATGCAATTTTATAAGGAGACTCTCTTCAAACTGAACACTTCAAAAGAGTCTTCAAGTTCTTCAAATACCATAGGTACCTTAATATGCCGCGACTGCCACAGAGATTGTTACGTAGCTTACATGCTGTGCGAGTACTGCGATTCCTGTCCAATTTGTCTTTACCATGACATTGCATCACAGAGGTGCTCCTGTGGGAGAATGTATACTATTTTTAAGAGGGATGACATGTTGGAAATGGAAGATGCTGCTAAAAAATTTGAACAGGAAAAAGATATCCAGTCGAAAGTTCACGGAAAAATGGATTGTGGTTGTGGAGCAAATACGTTATGTCTGTCATGTATATTCTCCATTACCAGAAATGAATGTGATAGCACTACTGGCCCAAACAACCAAGACTCAATCATCCACAGGCCCAAAAGAGGACCCCAGAAGCCCCTTTGGCTCAAGGATTTCACACCATAG 1674 0.3943 MDAPKVARQGRTRKTKANKKGKFDLNDLQWTSNIPECPVYHPSGQEFEDPSVYIQKIAPEASKFGICKIVSPIVASIPAVDVLTKEKKDFKFETNVQPLRLSDWNEKDKITFSMRGRNYTYHEFEAHANEAFLSRFHSFGGFSSSYLEKEFWREMAHGKKGTVEYGINIEGSAFSCDPNDKLGKSKWNLKNFSRLPQSTLRLVDKEIPGITDPMLYIGMLFSMFAWHVEDLYLYSINYHHSGANKIWYGVPAHAASQFENVVLNHVYCNKILSKHGEDGAFELLAHKTTMFPPIILLQNDVAVYKVVQKAGEFVITFPRAYHAGFSNGFNCGEAVNFAIGDWFPLGAAASKRYAHLRMFPIISYEELLCEEAMQIYKSLKVTGSKNKPKDLTAYHATVLSFVHLMQFYKETLFKLNTSKESSSSSNTIGTLICRDCHRDCYVAYMLCEYCDSCPICLYHDIASQRCSCGRMYTIFKRDDMLEMEDAAKKFEQEKDIQSKVHGKMDCGCGANTLCLSCIFSITRNECDSTTGPNNQDSIIHRPKRGPQKPLWLKDFTP 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3044 557 MobiDBLite consensus disorder prediction 527 557 - -
Ssu3g3044 557 Pfam JmjC domain, hydroxylase 214 337 IPR003347 -
Ssu3g3044 557 Pfam jmjN domain 38 70 IPR003349 -
Ssu3g3044 557 SMART cupin_9 184 354 IPR003347 -
Ssu3g3044 557 ProSiteProfiles JmjN domain profile. 37 78 IPR003349 -
Ssu3g3044 557 PANTHER LYSINE-SPECIFIC DEMETHYLASE 13 531 - -
Ssu3g3044 557 ProSiteProfiles JmjC domain profile. 184 354 IPR003347 -
Ssu3g3044 557 PANTHER TRANSCRIPTION FACTOR JUMONJI FAMILY PROTEIN 13 531 - -
Ssu3g3044 557 SUPERFAMILY Clavaminate synthase-like 150 374 - -
Ssu3g3044 557 SMART JmjN_1 36 72 IPR003349 -
Ssu3g3044 557 Gene3D Cupin 37 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3044 Ssu-Chr3 85928456 85931240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3044 33 508 JUMONJI Transcription Factor Family AT2G34880 32.000 3.00e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu3g3044 JmjC 9.2e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3044 - - gmx:100809650 739.184