Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3037 ATGGCTTTGTATTcagttattttcaaaattctcccAATTGCTCTGCTTCTCATCTGTTTGACCAAAGAAGCTTTAGGTGTGTCAAAGCTTTCAGTAACTGATTACCGTAGCCGGGAGGTACTGGCACAGCAAGAAGCTGACAGAGTGTATGGATTACCCGGGCAGCCAGCGGTGAAGTTCAAACAATATGCGGGTTATATCACGGTCAATGAAACTCATGGAAGAGCACTGTTCTATTGGTTCTTTGAGTCCACTCACAAACCAGAACAAAAACCTGTTCTCCTATGGCTCAACGGAGGCCCTGGTTGTTCCTCAATTGGTTATGGAGAAGCAGAGGAGCTAGGACCCTTCTTTCCCCAGGACAGCAACCAACCAAAGCTAAAGTTGAACCCTTATTCTTGGAATAAAGCTGCCAATCTTTTGTTTTTGGAATCCCCTGTTGGAGTGGGATTCTCCTACACCAACACCAGCAGTGATATAAGTGAGCTAGGTGACACTATTACTGCTAAAGATTCACACACCTTTGTCATCAAGTGGTTTAGGAGATTTCCACAATTCAGATCACACAAGTTATACATTGCAGGTGAAAGCTATGCAGGGCACTATGTTCCGCAACTTTCTGAgcttatttttgataataatcgCAATCCTAGCAATAAAGACTACATTAACTTCAAAGGATTCATGATTGGAAATGCATTATTGGACGACGAAACTGATCAAAAGGGTATGATAGATTATGCATGGGATCATGCTGTCATATCTGATGGATTATACCATAACATTACAACCATATGCAATTTCAGCCTTCCAAATCAAAAAAGTGACTGCAATGTGGAACTCAACAAATACTTCAATGTGTATAAGATTATTGACATGTATAGCTTGTACACACCTAGGTGTTtcagcaacaacagcaacaccAGAAAGGAAGCCCTTGTCATCAGAGGCGCAGCCCCTCAAACTTTTTCCAAAATTaATGGGTGGCATAAAAAACCAGCTGGATATGATCCTTGTGCATCTGATTATACTGAAGTGTACCTAAATAGGCCAGAAGTCCAAAAGGCATTGCATGCCAATGTCACCAAAATTCCGTATCCATGGACTCACTGCAGCAATAATATCTCATTTTGGAACGACGCACCACACTCCATGCTTTCTGTCATCAATAAGCTTATTGCTGGTGGTATTCGCATTTGGGTTTACAGTGGAGATACTGATGGAAGAATTCCCGTGACTGCAACAAGATACACACTAAGAAAGTTAGGACTTGGGATAGTTGAAGATTGGACTCCATGGTATACCAGCCAGCAGGTGGGAGGGTGGACCATTGTTTTCGATGGGCTTACTTTTGTTACAATAAGAGGTGCTGGTCATCAAGTTCCTACTTTCGCTCCCAAGCAAGCTCTACAGTTGGTTCGACACTTCTTAGCAAATAAGAAATTACCATCTCAACCAATTTAA 1464 0.403 MALYSVIFKILPIALLLICLTKEALGVSKLSVTDYRSREVLAQQEADRVYGLPGQPAVKFKQYAGYITVNETHGRALFYWFFESTHKPEQKPVLLWLNGGPGCSSIGYGEAEELGPFFPQDSNQPKLKLNPYSWNKAANLLFLESPVGVGFSYTNTSSDISELGDTITAKDSHTFVIKWFRRFPQFRSHKLYIAGESYAGHYVPQLSELIFDNNRNPSNKDYINFKGFMIGNALLDDETDQKGMIDYAWDHAVISDGLYHNITTICNFSLPNQKSDCNVELNKYFNVYKIIDMYSLYTPRCFSNNSNTRKEALVIRGAAPQTFSKINGWHKKPAGYDPCASDYTEVYLNRPEVQKALHANVTKIPYPWTHCSNNISFWNDAPHSMLSVINKLIAGGIRIWVYSGDTDGRIPVTATRYTLRKLGLGIVEDWTPWYTSQQVGGWTIVFDGLTFVTIRGAGHQVPTFAPKQALQLVRHFLANKKLPSQPI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3037 487 PANTHER CARBOXYPEPTIDASE 28 486 - -
Ssu3g3037 487 ProSitePatterns Serine carboxypeptidases, histidine active site. 449 466 IPR033124 GO:0004185
Ssu3g3037 487 SUPERFAMILY alpha/beta-Hydrolases 44 482 IPR029058 -
Ssu3g3037 487 Gene3D alpha/beta hydrolase 43 303 IPR029058 -
Ssu3g3037 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 179 204 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 PRINTS Carboxypeptidase C serine protease (S10) family signature 449 462 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 28 486 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 ProSitePatterns Serine carboxypeptidases, serine active site. 193 200 IPR018202 GO:0004185
Ssu3g3037 487 Gene3D - 339 375 - -
Ssu3g3037 487 Pfam Serine carboxypeptidase 54 479 IPR001563 GO:0004185|GO:0006508
Ssu3g3037 487 Gene3D - 385 478 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3037 Ssu-Chr3 85860506 85873440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3037 347 482 Calmodulin-binding Proteins AT2G22960 29.927 1.75e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3037 K16297 - gmx:100797264 883.634