LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g3032	atgtCAGCTAGTGCCGCGTCCGCCGGAACAGAATATTCCGGCGAAGAGGCGCTGCAGCAGGAGGCTGATAGAGTGAAGAACTTGCCGGGACAGCCGCCGGTGAAATTCAGACACTATGCTGGTTATGTGAAACTAAGGCCACATGAAGAGAAGGCATTGTTCTACTGGTTCTTTGAAGCTCAAGAAGCACCATCGCAAAAGCCTCTCGTGCTTTGGCTTAACGGAGGACCTGGTTGCTCGTCCGTTGCCTATGGAGCAGCACGAGAGCTTGGTCCATTTCTTGTCGAAGACAAAGAACGCCTCAAACTTAACAAATTCTCTTGGAACAAAGTTGCAAACATCATATTCTTGGAGGCACCAGTTGGTGTCGGCTTCTCCTACACTAACAATTCCAAAGATTTACATGAGCTTGGGGATCGAGTTACTGCCATTGATAACTATGCCTTCTTGATTGGTTGGTTCAAAAGGTTCCCAAGCTTCAGATCCCACGACTTTTATATTGCAGGAGAGAGCTATGCAGGGCATTATGTTCCACAGCTTGCTGACCTTATCTATGAAGGAAATAGAGATACCAAAAAAGGCTCTTACATAAATCTCAAGGGATTCATGGTGGGAAATGCTGTGATGAATGATCTTACAGATATAAATGGGTTGGTTGATTATGCTTGGAGCCACGCCATCATCTCAGACCAAGTATACCATGGGATGGTAAAAGATTGTGATTTTAGTAAAGAGAACCAAACAAGGGATTGCGATTTGCATATTGCAAGGTTAATGGAAGCTTACTCCGATATTGACATATACAGCATTTACTCGCCCATTTGTCTCAATGAGTATCAAAGAGCAGTTTCACCAAAACTTGTCGTTGCTCCCCGTCTTCTCACACGACATGACCTGTGGCATACGCTATCGTCAGGATATGATCCCTGTACAGAAGATTACGTAGGCAAATACTTCAATAATAAGGATGTTCAGGAGGCCCTCCATGCCAATATCACCAACTTGTCTTATCCTTATAGCCTTTGCAGCGATGTAATTAACAAATGGAATGACTCACCAAACACAGTTTTGCCAATTATTGAGAAGCTCTTACATGCCGGTTTACGCATTTGGATATACAGTGGGGACACGGATGGTAGAGTTCCAGTGACATCAACAAGATACAGCATAAAGAAGATGGGTTTGAAAGTAAAGAAAGAGTGGAGAGCTTGGTTTCACAAGCATCAAGTGGCAGGGTGGATGGAGGTGTACGAGGGTGGCCTCACCTTTGCCACCATTAGAGGTGCTGGCCACCAAGTTCCTATCTTAAGGCCAGAGCAGGCCCTTTCTCTCTTCGTTCATTTCCTCGCTTCTCATGTCCTCCCATCTTCTCACTTCTAG	1380	0.45	MSASAASAGTEYSGEEALQQEADRVKNLPGQPPVKFRHYAGYVKLRPHEEKALFYWFFEAQEAPSQKPLVLWLNGGPGCSSVAYGAARELGPFLVEDKERLKLNKFSWNKVANIIFLEAPVGVGFSYTNNSKDLHELGDRVTAIDNYAFLIGWFKRFPSFRSHDFYIAGESYAGHYVPQLADLIYEGNRDTKKGSYINLKGFMVGNAVMNDLTDINGLVDYAWSHAIISDQVYHGMVKDCDFSKENQTRDCDLHIARLMEAYSDIDIYSIYSPICLNEYQRAVSPKLVVAPRLLTRHDLWHTLSSGYDPCTEDYVGKYFNNKDVQEALHANITNLSYPYSLCSDVINKWNDSPNTVLPIIEKLLHAGLRIWIYSGDTDGRVPVTSTRYSIKKMGLKVKKEWRAWFHKHQVAGWMEVYEGGLTFATIRGAGHQVPILRPEQALSLFVHFLASHVLPSSHF	459

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g3032	459	ProSitePatterns	Serine carboxypeptidases, histidine active site.	421	438	IPR033124	GO:0004185
	Ssu3g3032	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	104	116	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	117	127	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	153	178	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	PRINTS	Carboxypeptidase C serine protease (S10) family signature	421	434	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	SUPERFAMILY	alpha/beta-Hydrolases	20	454	IPR029058	-
	Ssu3g3032	459	Gene3D	-	310	348	-	-
	Ssu3g3032	459	PANTHER	SERINE CARBOXYPEPTIDASE-LIKE 35	18	451	-	-
	Ssu3g3032	459	Pfam	Serine carboxypeptidase	29	450	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	Gene3D	alpha/beta hydrolase	19	277	IPR029058	-
	Ssu3g3032	459	Gene3D	-	356	450	-	-
	Ssu3g3032	459	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	18	451	IPR001563	GO:0004185\|GO:0006508
	Ssu3g3032	459	ProSitePatterns	Serine carboxypeptidases, serine active site.	167	174	IPR018202	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g3032	Ssu-Chr3	85800148	85817713	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g3032	315	454	Calmodulin-binding Proteins	AT2G22960	28.369	5.37e-12	62.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g3032	K16297		-	gmx:100799746	815.839