Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3023 ATGGACTCCACATTAGACTTAGACGTCGACGATGTTATTATTGATGATGATTCTTCAGATCTTCCAAGCATGGATAAGGAGGACCAGAAACTAGGCAAGGATGACTACATAGAGGGAGCTAAGATCAATTCTGCTGATTATAAGACCACATCAAAGGAGCAGCGACACTACACTATTTTAAGCGAATCCGACATCAAGCGACTTCAAGACACCGACATCAATGAGGTTTCTTCTATTCTCGTGATATCAAGAGTTGGTGCTTGCCTTTTGCTCATCCACCATGAGTGGAGTGTGCTCAAAGTGCATGAAGCGTGGTTTGATGACGAAGAAAGAGTTCGCAAAGCCATAGGGTTGCTAAAGCAGCAGGAAGGCCAGGTAGGTTTTCCCAACTCAAAAACCCTCACGTGTGAGATTTGTTTCGATGTTGCTTCATGTGATAAGGTTAGGTCAGCTAGTTGTGGTCATCCATATTGCATCCTTTGCTGGAAGCGGTATGTGGAAACAAGCATCGATGAGGGCCCTGATAAGTGCTTGAAACTTAGATGCCCCCAACCATCTTGTGATGTAGCTGTGGGTGGAGACATGATTCACGAACTTGCAAGTGAGTCAAAGAGAAACAAGTACGATCGGTTTCTATTTCGATCTTACGTGGAAAACAATAAGAAGATGAAGTGGTGTCCTGCTCCAGCTTGTGAGTATGTTGTGAGTTATGAACCATATGATGCTAAAACTAACTCAGATGTTACCTGTCTTTGTTATCACTCTATTTGTTGGAGTTGTGGGGAAGAAGCTCATAGCCCTGTGGATTGTGAAATCGTGAAACATTGGATCAAGGACAATAATTTTGCATCTGAGAACATTACTTGGATTCTTGCTCATACCAAATCCTGCCCCAAATGCAAGATACCCATTGAGAAAGTTGACGGGTGTGTACACATGGAATGCAAGTGTGGGTTCCAATTTTGCTGGTTATGTCTTCGTGACTGGTCCAAGTGTTGTTACAACTGCcacaatttttctaataagGATATTTATAGGGAAGAAGTGAAGAGAAATGTGGCGATGGATTTTTTGGAGACGTATAAGCATTGGGCTAGCAATGATTTGTCAAGAAAAAATGCGCTTAAGCGTCTAATTAAACTGACAAGTTCTGGGCATACAAAGAGATTGAGTATGTTATATCAAAGGTCAGAAGATTATTTTGAGTTCATAAAAGTGGCATGGCAACAAGTGGTTGAGTGTAGAAGAGTCCTTAAATGGACCTATCCATATGGATACTATCTCCTTAGGAGTGAACAGGCTAAGATGGAGTTTTTTGAGTTCACACAACGTGAGGCTGAGGCTACTTTGGAAAAGCTTCATCACTGTGTACAAAAGGAACTAAGCGAGTTTCTGTATGCTAATGAACCTAAAAgtacatttaatgtttttcgTATCAAGTTAATAGATCTTACCAGTTCGACCAAGAATTATTTTGAGAATATGCTAAAAGCATTAGAAAATAGACTGGCTGATGTGCATATGAAAAGATATGATGGGGCCAGTAAGGTGAAAAGAGGGTCAATAGAGATGGGGGAGAGCTCAAGTGGAAATTAA 1596 0.4035 MDSTLDLDVDDVIIDDDSSDLPSMDKEDQKLGKDDYIEGAKINSADYKTTSKEQRHYTILSESDIKRLQDTDINEVSSILVISRVGACLLLIHHEWSVLKVHEAWFDDEERVRKAIGLLKQQEGQVGFPNSKTLTCEICFDVASCDKVRSASCGHPYCILCWKRYVETSIDEGPDKCLKLRCPQPSCDVAVGGDMIHELASESKRNKYDRFLFRSYVENNKKMKWCPAPACEYVVSYEPYDAKTNSDVTCLCYHSICWSCGEEAHSPVDCEIVKHWIKDNNFASENITWILAHTKSCPKCKIPIEKVDGCVHMECKCGFQFCWLCLRDWSKCCYNCHNFSNKDIYREEVKRNVAMDFLETYKHWASNDLSRKNALKRLIKLTSSGHTKRLSMLYQRSEDYFEFIKVAWQQVVECRRVLKWTYPYGYYLLRSEQAKMEFFEFTQREAEATLEKLHHCVQKELSEFLYANEPKSTFNVFRIKLIDLTSSTKNYFENMLKALENRLADVHMKRYDGASKVKRGSIEMGESSSGN 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3023 531 SUPERFAMILY RING/U-box 289 339 - -
Ssu3g3023 531 ProSiteProfiles TRIAD supradomain profile. 132 340 IPR044066 -
Ssu3g3023 531 SMART ibrneu5 206 270 IPR002867 -
Ssu3g3023 531 SMART ibrneu5 283 332 IPR002867 -
Ssu3g3023 531 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 31 507 IPR031127 GO:0004842|GO:0016567
Ssu3g3023 531 Pfam IBR domain, a half RING-finger domain 206 270 IPR002867 -
Ssu3g3023 531 SUPERFAMILY RING/U-box 207 277 - -
Ssu3g3023 531 Gene3D - 266 506 - -
Ssu3g3023 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 220 IPR013083 -
Ssu3g3023 531 ProSiteProfiles Zinc finger RING-type profile. 136 183 IPR001841 -
Ssu3g3023 531 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI5-RELATED 31 507 - -
Ssu3g3023 531 SUPERFAMILY RING/U-box 130 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3023 Ssu-Chr3 85687225 85688820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3023 52 518 ARIADNE family AT1G65430 47.934 1.21e-153 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3023 K11968 - gmx:100801350 743.806