Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3015 ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAAGTTGACGCTGCTCCAGCTGTGGTTCCGCCATCGAAGTCTGCCAAAAAGGGCGGCAAGAGGCAAACTGAAGATGAAATTGAGAAGCAAGTGAGTGCAAAAAAGCAGAAGATAGAGGAGGTTGCTCAGAAGCAAAAGAAGGACGCAAAGGTgcaaaagaagaaggaaagtaGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGCCAAACCTGCTGTTCTTTCAAAAAAGATAACTGCTAAAAATGGTGCTCTAAGTACCCCAGCAAAGAAGGGCAAGCCAGCCTCCAGTTCTTCTGAATCATCTGAAGATGACTCCTCTGATGAGGAAGAAGTGATTGCAAAGAGGCCGCAGAAAGTAGTGGTTGCTGAGAAACAGAAGGAAGCAaaggtgaaaaataataagaaggAAAGTAGCTCAGATGGTTCTTCTTCAGAATCTGAAGATGAGAAACCCGCAGCAAAAGCTGCTGTACCTTCAAAAAAGACACCTGCTAAAAATGGCAATTTAAGTACCCCAGCAAAGAAAGGCAAGCCTGCTGCCAGTTCAAGCTCTTCTGAATCATCCGATGATGACTCTGATGAGAATGAGGCTCTAAAATCCAAGGTGGTCCCTGCTGCAGGCAAGAATGGACCTGCTTCTACAAAAATAACTCAGCCAAGTGGAAGTTCTGATAGCTCTGAGTCTGATTCTGATAGCAGCTCTGATGAGAAaaagAATAAGAAAAAACCTGCAACTACAAAGCTGCCTGCATTGTCGATTGCTCCAGCTAAGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGAAAATGATGCAAAGCCTGCTGTAACTGCTGTGTCAAAGCCTTCTGCTGTTGCAAAAAAGAAGGTTGACAGCTCTGATTCTGATGATAGCAGCTCTGAGGAagacaatAAAAATGATGTCAAAACTGTTTCCAATGCCAAGTCAGAGCCTGTGTCCAAGCAGCCTGTAAAGAAGTCAAGTAGTAGTGATTCTGATGAAGAGGAGTCTTCTGATAGTGACTCTGAGGATGAAATGAAAACTGCACAAGTTTCTTCTGTTAACAAGAAACTAGCACCTGTTGTGAAGACAGCTAAAAAGGTGTCTTCCTCAGAGAGTGATTCTTCAGATGATGAGGGGAAGATGGATATTGATGAGGATGATAGTTCTGATGAAAGTGAAGAGccacaaaagaaaaagACTGTGAAAGATTCAAAAGAAAGCAGTGATAGTGATAGTTCTGAGGATAGCGAGGAGGAAATTGAGGAGAAACCTTCCAAAACTCCTCAGAAAAGAGTTAGGGATGTGGAGATGGTTGATGCTACCTCATCTGGAAAGAAAGCTCCTAAAACCCCAGCTACACCGAAAGAAGAAAGTGGTGCTTCAAAGACACTATTTGTTGGGAACTTGTCGTACAGTGTTGAACGAGCTGATGTggaaaattttttcaaagattGTGGAGAAGTTGTTGATGTTCGTCTTGCTATGGATGATGATGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGCGGAGGCTGCCCAAAATGCCCTTGAGTTGAATGGACAAGAATTATTTAATCGTGCACTCCGGCTTGATGTAGCTCTGGAAAGGAGTGCATATACCCCCAATAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGAAGAGGCCAGTCAACGGTATTTGTGAGGGGATTTGATAAATCCCTTGGGGAAGATGAGATAAGAGCTAGTTTGCAAGAACATTTTGGTTCCTGTGGGGACATTACAAGGGTATCTGTTCCGAAAGATTATGAGTCTGGTGCTGTAAAGGGGTTTGCTTACTTGGACTTCAGTGATGCTGATAGCTTGAACAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCTTGTCAGTGGATGAAGCCAAACCTAAAGGTGATAATCAAGGTTCTGGTGGTAGAGGTGCAGGTGGAAGGAGTGGTGGCGGCGGTCGATTTGGTGGAAGGGGTGGTGGCGGTCGATTTGGTGGaaggggtggtggtggtggtcaaTTTGGTGGAAGAGGTGGTGGTGGTCAGTTTGGTGgaagaggtggtggtggtggtggtggtcgaTTTGGTGGAAGAGGTGGTCGAGGAAGAGGTGGCGGAGGGGGTCGTGGAACTCCATATAAACCCAGCCTTGCTGCGGAAGGCACAGGTATAATTCGTCTTTTATCCTTCCCATTTCTCATTTAA 2292 0.4206 MGKSSKKSALKVDAAPAVVPPSKSAKKGGKRQTEDEIEKQVSAKKQKIEEVAQKQKKDAKVQKKKESSSDDSSSESEDEKPAAKPAVLSKKITAKNGALSTPAKKGKPASSSSESSEDDSSDEEEVIAKRPQKVVVAEKQKEAKVKNNKKESSSDGSSSESEDEKPAAKAAVPSKKTPAKNGNLSTPAKKGKPAASSSSSESSDDDSDENEALKSKVVPAAGKNGPASTKITQPSGSSDSSESDSDSSSDEKKNKKKPATTKLPALSIAPAKKVESSDDESSESSDEENDAKPAVTAVSKPSAVAKKKVDSSDSDDSSSEEDNKNDVKTVSNAKSEPVSKQPVKKSSSSDSDEEESSDSDSEDEMKTAQVSSVNKKLAPVVKTAKKVSSSESDSSDDEGKMDIDEDDSSDESEEPQKKKTVKDSKESSDSDSSEDSEEEIEEKPSKTPQKRVRDVEMVDATSSGKKAPKTPATPKEESGASKTLFVGNLSYSVERADVENFFKDCGEVVDVRLAMDDDGRFKGFGHVEFATAEAAQNALELNGQELFNRALRLDVALERSAYTPNSSNWNNSSQKSGRGQSTVFVRGFDKSLGEDEIRASLQEHFGSCGDITRVSVPKDYESGAVKGFAYLDFSDADSLNKALELHETELGGYTLSVDEAKPKGDNQGSGGRGAGGRSGGGGRFGGRGGGGRFGGRGGGGGQFGGRGGGGQFGGRGGGGGGGRFGGRGGRGRGGGGGRGTPYKPSLAAEGTGIIRLLSFPFLI 763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3015 763 SMART rrm1_1 582 658 IPR000504 GO:0003723
Ssu3g3015 763 SMART rrm1_1 483 554 IPR000504 GO:0003723
Ssu3g3015 763 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 484 552 IPR000504 GO:0003723
Ssu3g3015 763 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 583 655 IPR000504 GO:0003723
Ssu3g3015 763 MobiDBLite consensus disorder prediction 412 429 - -
Ssu3g3015 763 Gene3D - 386 564 IPR012677 -
Ssu3g3015 763 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 581 662 IPR000504 GO:0003723
Ssu3g3015 763 PANTHER BNAA08G02930D PROTEIN 333 685 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 27 85 - -
Ssu3g3015 763 Gene3D - 565 680 IPR012677 -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 178 201 - -
Ssu3g3015 763 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 482 558 IPR000504 GO:0003723
Ssu3g3015 763 MobiDBLite consensus disorder prediction 397 411 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 1 479 - -
Ssu3g3015 763 SUPERFAMILY RNA-binding domain, RBD 473 579 IPR035979 GO:0003676
Ssu3g3015 763 MobiDBLite consensus disorder prediction 439 460 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 654 746 - -
Ssu3g3015 763 CDD RRM1_NUCLs 483 559 IPR034349 -
Ssu3g3015 763 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 333 685 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 123 170 - -
Ssu3g3015 763 SUPERFAMILY RNA-binding domain, RBD 577 690 IPR035979 GO:0003676
Ssu3g3015 763 Coils Coil 30 65 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 330 345 - -
Ssu3g3015 763 MobiDBLite consensus disorder prediction 226 243 - -
Ssu3g3015 763 CDD RRM2_NUCLs 582 660 IPR034350 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Ssu3g3015 Ssu-Chr3 85357052 85362751 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3015 484 644 Eukaryotic Initiation Factors Gene Family AT4G34110 31.098 3.02e-13 71.2
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3015 K11294 - gmx:100779929 533.487