Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu3g3015 | ATGGGCAAGTCAAGCAAGAAATCAGCTCTCAAAGTTGACGCTGCTCCAGCTGTGGTTCCGCCATCGAAGTCTGCCAAAAAGGGCGGCAAGAGGCAAACTGAAGATGAAATTGAGAAGCAAGTGAGTGCAAAAAAGCAGAAGATAGAGGAGGTTGCTCAGAAGCAAAAGAAGGACGCAAAGGTgcaaaagaagaaggaaagtaGTTCAGATGATTCTTCTTCAGAATCTGAAGATGAGAAACCTGCAGCCAAACCTGCTGTTCTTTCAAAAAAGATAACTGCTAAAAATGGTGCTCTAAGTACCCCAGCAAAGAAGGGCAAGCCAGCCTCCAGTTCTTCTGAATCATCTGAAGATGACTCCTCTGATGAGGAAGAAGTGATTGCAAAGAGGCCGCAGAAAGTAGTGGTTGCTGAGAAACAGAAGGAAGCAaaggtgaaaaataataagaaggAAAGTAGCTCAGATGGTTCTTCTTCAGAATCTGAAGATGAGAAACCCGCAGCAAAAGCTGCTGTACCTTCAAAAAAGACACCTGCTAAAAATGGCAATTTAAGTACCCCAGCAAAGAAAGGCAAGCCTGCTGCCAGTTCAAGCTCTTCTGAATCATCCGATGATGACTCTGATGAGAATGAGGCTCTAAAATCCAAGGTGGTCCCTGCTGCAGGCAAGAATGGACCTGCTTCTACAAAAATAACTCAGCCAAGTGGAAGTTCTGATAGCTCTGAGTCTGATTCTGATAGCAGCTCTGATGAGAAaaagAATAAGAAAAAACCTGCAACTACAAAGCTGCCTGCATTGTCGATTGCTCCAGCTAAGAAAGTGGAAAGCTCAGATGATGAATCAAGTGAAAGCTCTGATGAAGAAAATGATGCAAAGCCTGCTGTAACTGCTGTGTCAAAGCCTTCTGCTGTTGCAAAAAAGAAGGTTGACAGCTCTGATTCTGATGATAGCAGCTCTGAGGAagacaatAAAAATGATGTCAAAACTGTTTCCAATGCCAAGTCAGAGCCTGTGTCCAAGCAGCCTGTAAAGAAGTCAAGTAGTAGTGATTCTGATGAAGAGGAGTCTTCTGATAGTGACTCTGAGGATGAAATGAAAACTGCACAAGTTTCTTCTGTTAACAAGAAACTAGCACCTGTTGTGAAGACAGCTAAAAAGGTGTCTTCCTCAGAGAGTGATTCTTCAGATGATGAGGGGAAGATGGATATTGATGAGGATGATAGTTCTGATGAAAGTGAAGAGccacaaaagaaaaagACTGTGAAAGATTCAAAAGAAAGCAGTGATAGTGATAGTTCTGAGGATAGCGAGGAGGAAATTGAGGAGAAACCTTCCAAAACTCCTCAGAAAAGAGTTAGGGATGTGGAGATGGTTGATGCTACCTCATCTGGAAAGAAAGCTCCTAAAACCCCAGCTACACCGAAAGAAGAAAGTGGTGCTTCAAAGACACTATTTGTTGGGAACTTGTCGTACAGTGTTGAACGAGCTGATGTggaaaattttttcaaagattGTGGAGAAGTTGTTGATGTTCGTCTTGCTATGGATGATGATGGGAGGTTTAAAGGATTTGGACATGTTGAGTTTGCAACAGCGGAGGCTGCCCAAAATGCCCTTGAGTTGAATGGACAAGAATTATTTAATCGTGCACTCCGGCTTGATGTAGCTCTGGAAAGGAGTGCATATACCCCCAATAGCAGCAACTGGAACAACTCATCCCAGAAAAGTGGAAGAGGCCAGTCAACGGTATTTGTGAGGGGATTTGATAAATCCCTTGGGGAAGATGAGATAAGAGCTAGTTTGCAAGAACATTTTGGTTCCTGTGGGGACATTACAAGGGTATCTGTTCCGAAAGATTATGAGTCTGGTGCTGTAAAGGGGTTTGCTTACTTGGACTTCAGTGATGCTGATAGCTTGAACAAAGCTCTAGAACTCCATGAAACTGAACTTGGAGGTTATACCTTGTCAGTGGATGAAGCCAAACCTAAAGGTGATAATCAAGGTTCTGGTGGTAGAGGTGCAGGTGGAAGGAGTGGTGGCGGCGGTCGATTTGGTGGAAGGGGTGGTGGCGGTCGATTTGGTGGaaggggtggtggtggtggtcaaTTTGGTGGAAGAGGTGGTGGTGGTCAGTTTGGTGgaagaggtggtggtggtggtggtggtcgaTTTGGTGGAAGAGGTGGTCGAGGAAGAGGTGGCGGAGGGGGTCGTGGAACTCCATATAAACCCAGCCTTGCTGCGGAAGGCACAGGTATAATTCGTCTTTTATCCTTCCCATTTCTCATTTAA | 2292 | 0.4206 | MGKSSKKSALKVDAAPAVVPPSKSAKKGGKRQTEDEIEKQVSAKKQKIEEVAQKQKKDAKVQKKKESSSDDSSSESEDEKPAAKPAVLSKKITAKNGALSTPAKKGKPASSSSESSEDDSSDEEEVIAKRPQKVVVAEKQKEAKVKNNKKESSSDGSSSESEDEKPAAKAAVPSKKTPAKNGNLSTPAKKGKPAASSSSSESSDDDSDENEALKSKVVPAAGKNGPASTKITQPSGSSDSSESDSDSSSDEKKNKKKPATTKLPALSIAPAKKVESSDDESSESSDEENDAKPAVTAVSKPSAVAKKKVDSSDSDDSSSEEDNKNDVKTVSNAKSEPVSKQPVKKSSSSDSDEEESSDSDSEDEMKTAQVSSVNKKLAPVVKTAKKVSSSESDSSDDEGKMDIDEDDSSDESEEPQKKKTVKDSKESSDSDSSEDSEEEIEEKPSKTPQKRVRDVEMVDATSSGKKAPKTPATPKEESGASKTLFVGNLSYSVERADVENFFKDCGEVVDVRLAMDDDGRFKGFGHVEFATAEAAQNALELNGQELFNRALRLDVALERSAYTPNSSNWNNSSQKSGRGQSTVFVRGFDKSLGEDEIRASLQEHFGSCGDITRVSVPKDYESGAVKGFAYLDFSDADSLNKALELHETELGGYTLSVDEAKPKGDNQGSGGRGAGGRSGGGGRFGGRGGGGRFGGRGGGGGQFGGRGGGGQFGGRGGGGGGGRFGGRGGRGRGGGGGRGTPYKPSLAAEGTGIIRLLSFPFLI | 763 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu3g3015 | 763 | SMART | rrm1_1 | 582 | 658 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | SMART | rrm1_1 | 483 | 554 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 484 | 552 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 583 | 655 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 412 | 429 | - | - | |
Ssu3g3015 | 763 | Gene3D | - | 386 | 564 | IPR012677 | - | |
Ssu3g3015 | 763 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 581 | 662 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | PANTHER | BNAA08G02930D PROTEIN | 333 | 685 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 27 | 85 | - | - | |
Ssu3g3015 | 763 | Gene3D | - | 565 | 680 | IPR012677 | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 178 | 201 | - | - | |
Ssu3g3015 | 763 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 482 | 558 | IPR000504 | GO:0003723 | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 397 | 411 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 1 | 479 | - | - | |
Ssu3g3015 | 763 | SUPERFAMILY | RNA-binding domain, RBD | 473 | 579 | IPR035979 | GO:0003676 | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 439 | 460 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 654 | 746 | - | - | |
Ssu3g3015 | 763 | CDD | RRM1_NUCLs | 483 | 559 | IPR034349 | - | |
Ssu3g3015 | 763 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 333 | 685 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 123 | 170 | - | - | |
Ssu3g3015 | 763 | SUPERFAMILY | RNA-binding domain, RBD | 577 | 690 | IPR035979 | GO:0003676 | |
Ssu3g3015 | 763 | Coils | Coil | 30 | 65 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 330 | 345 | - | - | |
Ssu3g3015 | 763 | MobiDBLite | consensus disorder prediction | 226 | 243 | - | - | |
Ssu3g3015 | 763 | CDD | RRM2_NUCLs | 582 | 660 | IPR034350 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu3g3015 | Ssu-Chr3 | 85357052 | 85362751 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu3g3015 | 484 | 644 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 31.098 | 3.02e-13 | 71.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu3g3015 | K11294 | - | gmx:100779929 | 533.487 |