Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3014 ATGTACTTGAGGAGAATACAGTGCAGAGATCGGACATGGGCTTTGGTGTTGCAGCCATCAAAATACTTCTTTAGGCCAAGATTCTCTGATCATCCATACTTTCAATCTTTGTCCCCTAAGACCACTGTGAAAGAATATTCTTCACATGGCAGGATCATCAGAAAACCTCTTTTACGTTCAGATTCATGTCGGCATATTTCATCTAGAAATAGTTTTGCTGGTCTGGACAAAAGGCCTAGCTTATGTATTAACAGTACTCAGTTACGTTCCTATAGTTCTGAAAGTGATGGAAGAAATGCAAGTGAGGATAAACATGTACATGTTAATGATGGAGCTACCTTTGATAAAGGACAGAATCAACAAGAGAAGTTTGGGAAAGGTGTCAAGCACTGCAATGCACATGCACGACTTGAAGAGCAGGAACAAGAGGAATGGCTTAATAATGAGAAGCTTgctatagaaattaaaaagagagaatcACCATTTTTGACAAGAAGGGATaagtttaaaaatgagtttatgagAAGAATTATTCCTTGGGAGAAAATAAACATTTCCTGGGACAGATTTCCTTATCACATTCATGAGAATACCAAAAATCTTCTGGTGGAATGTGCTGCTTCCCATTTGAGACATAATAAGTTTGCTTCATCTTTTGGCACTCGCCTTACATCTTCAAGTGGGAGAATATTGCTTCAGAGCATTCCTGGCACTGAGCTGTATCGTGAGAGATTGGTTAGAGCTCTTGCACAAGATTTACAAGTTCCTCTGTTAGTGCTTGATAACAGCATTCTTGCTCCTTATGATGTTGATGATGATTTATCATCAGATTATGAGTCTGAAGACGATAATGCAGAGTCTGGAGAGGAGGGTTCTCTGGAATCAGAGAATGAGGATGATAATGATGCCAGCAATGAAGAAGAGTGGGCTAGCAGTACCGAGGCAAAGTCAGATGCAAGTGATAATGAAGATGCAGTAGCATCTGCTGAAGCACACCTTAAGAAGGTTAAAGCGGCTGTTCTTCGGAAACTTGTCCCTTACAATGTTGAAGAATTTGAAAAGATAGTGTCTGAAGAATCTGAGAGTTCTGAGTCATCCAAGTCTAATGATGTCAAATCTTCTGATAAATCTGGATGCCAGCTAAGAAAAGGTGACCGTGTGAAGTACATTGGGCCATCTGTTCAAGTTACAGATGAGGATAGGATCATACTGGGGAAGATACCGACATCTGATGGTCCAACTAATGCTTATACTATTATACATGGCAGGCCTTTAACTAATGGTCAGCGAGGAGAGGTATATGAGGTTAATGGAGATCGAGTTGCTGTCATCTTGGATATTAATGAAGACAGGGTCAATGAGGGTGGGGTGCAGAACCTTAATGACGATAGTACAAAACCTCCAATTTATTGGATACATGTCAAGGACATTGAGAATGATCTTGATGCTCAATCACAGGATTGCTACATAGCAGTGGAGGCTTTATGTGAGGTTTTGAATTGCAAGCAACCTCTAATTGTCTATTTTCCGGACAGTTCACAATGGTTACATAAATCAGTTCCTAAGTCAAACAGAAGTGAGTTTTTTCATAAGGTTGAAGAGATGTTTGACCGGTTATCTGGCCCTGTAGTATTGATTTGTGGGCAAAACAAAGTTCAGTCAGGatcaaaagagaaagaacaattTACAATGATACTTCCTAACTTTGGACGTGTTGCTAAGCTGCCTCTTTCTCTGAAGCGTTGGACTGAGGGAATTAAAGGGGACAAGACATCAGAAGATGATGAAATAAACAAGCTCTTCTCTAATGTTTTGAGTATACATCCACCTAAGGATGAGAATCTGCTGGCAACATTCAAGAAACAACTTGAGGAAGATAGGAAAATTGTGACTTCACGTAGTAATTTGAATGTATTACGGAAGGTTCTTGAAGAACATCAGCTATCATGCATAGACCTTTTGCCTGTAAATACTGATGGcatcattttgaataagcatAAAGCTGAAAAAGTGGTAGGCTGGGCAAAAAATCATTACTTGTCTTCATGCTTGCTTCCTTCTGTTAAAGGAGAAAGATTGTGCCTACCTCGTGAGAGTCTTGAAATTGCAGTCTCAAGATTGAAGACTCAGGAAACTATGTCACGGAAGCCTTCTCAGAGCCTCAAGAACCTTGCAAAGGATGAGTTTGAGGGCAATTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAAAAGGCACTTAATGAACTCGTTATTCTTCCAATGAGAAGGCCAGAGCTTTTTTCTCATGGAAATCTGTTGCGGCCCTGTAAGGGAATATTACTTTTTGGTCCTCCTGGCACTGGGAAAACCCTTCTGGCCAAGGCACTTGCAACCGAAGCTGGTGCAAATTTTATCAGCATAACTGGTTCGACCCTTACTTCAAAGTGGTTTGGAGATGCTGAAAAACTAACCAAAGCGCTTTTCTCATTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTTGATGAAGTTGACAGTTTGCTTGGTGCTCGAGGTGGTGCTTTTGAGCATGAGGCCACTAGGAGAATGAGGAATGAGTTCATGGCAGCTTGGGATGGATTGAGGTCAAAAGAAAACCAAAGAATACTTATTCTTGGTGCTACAAACCGGCCATTTGACCTTGATGACGCTGTTATTCGTCGCTTACCAAGAAGGATATATGTTGATTTACCAGATGCTGAAAATCGAATGAAGATTTTAAGAATCTTTCTTGCACAAGAAAATTTGGATTCTGATTTTCAGTTTGACAAACTTGCTAACTTGACTGATGGATACTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAAACCTGTTCAAGAACTTTTAGAGGAGGAAAAGAAGGGAGCCAGTAATGGAACAACTTCGGTAATAAGGCCTCTTAATTTGGATGATTTTATTCAGTCAAAATCCAAgGTGGGTCCATCAGTTGCTTATGATGCAACGAGCATGAATGAGCTGAGGAAGTGGAACGAAATGTACGGAGAAGGCGGTAGTAGGACAAAATCACCATTTGGATTTGGGAGCTGA 3120 0.3968 MYLRRIQCRDRTWALVLQPSKYFFRPRFSDHPYFQSLSPKTTVKEYSSHGRIIRKPLLRSDSCRHISSRNSFAGLDKRPSLCINSTQLRSYSSESDGRNASEDKHVHVNDGATFDKGQNQQEKFGKGVKHCNAHARLEEQEQEEWLNNEKLAIEIKKRESPFLTRRDKFKNEFMRRIIPWEKINISWDRFPYHIHENTKNLLVECAASHLRHNKFASSFGTRLTSSSGRILLQSIPGTELYRERLVRALAQDLQVPLLVLDNSILAPYDVDDDLSSDYESEDDNAESGEEGSLESENEDDNDASNEEEWASSTEAKSDASDNEDAVASAEAHLKKVKAAVLRKLVPYNVEEFEKIVSEESESSESSKSNDVKSSDKSGCQLRKGDRVKYIGPSVQVTDEDRIILGKIPTSDGPTNAYTIIHGRPLTNGQRGEVYEVNGDRVAVILDINEDRVNEGGVQNLNDDSTKPPIYWIHVKDIENDLDAQSQDCYIAVEALCEVLNCKQPLIVYFPDSSQWLHKSVPKSNRSEFFHKVEEMFDRLSGPVVLICGQNKVQSGSKEKEQFTMILPNFGRVAKLPLSLKRWTEGIKGDKTSEDDEINKLFSNVLSIHPPKDENLLATFKKQLEEDRKIVTSRSNLNVLRKVLEEHQLSCIDLLPVNTDGIILNKHKAEKVVGWAKNHYLSSCLLPSVKGERLCLPRESLEIAVSRLKTQETMSRKPSQSLKNLAKDEFEGNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSHGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGAFEHEATRRMRNEFMAAWDGLRSKENQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDSDFQFDKLANLTDGYSGSDLKNLCIAAAYKPVQELLEEEKKGASNGTTSVIRPLNLDDFIQSKSKVGPSVAYDATSMNELRKWNEMYGEGGSRTKSPFGFGS 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3014 1039 CDD AAA 784 917 - -
Ssu3g3014 1039 MobiDBLite consensus disorder prediction 272 307 - -
Ssu3g3014 1039 MobiDBLite consensus disorder prediction 356 379 - -
Ssu3g3014 1039 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 1037 - -
Ssu3g3014 1039 Pfam AAA+ lid domain 939 974 IPR041569 -
Ssu3g3014 1039 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 745 975 IPR027417 -
Ssu3g3014 1039 MobiDBLite consensus disorder prediction 271 324 - -
Ssu3g3014 1039 Pfam ATPase family associated with various cellular activities (AAA) 786 916 IPR003959 GO:0005524|GO:0016887
Ssu3g3014 1039 Gene3D - 918 1003 - -
Ssu3g3014 1039 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 1 1037 - -
Ssu3g3014 1039 MobiDBLite consensus disorder prediction 309 324 - -
Ssu3g3014 1039 Gene3D - 745 1021 IPR027417 -
Ssu3g3014 1039 ProSitePatterns AAA-protein family signature. 889 908 IPR003960 GO:0005524|GO:0016887
Ssu3g3014 1039 SMART AAA_5 782 919 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3014 Ssu-Chr3 85325612 85350200 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3014 745 977 Calmodulin-binding Proteins AT3G56690 38.559 7.68e-41 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3014 - - gmx:100802939 1812.35