Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3013 ATGTCGCGCCAGACGACGTCGTCTGCCTTCACTAAATCGAAGACCCTCGACAACAAATATATGCTGGGAGATGAGATTGGAAAAGGAGCTTATGGTCGGGTTTATAAAGGTTTGGACCTGGAGAATGGAGATTTTGTTGCCATTAAACAAGTTTCTTTGGAGAATATTGCTCAGGAGgatctcaacatcatcatgCAAGAGATTGATTTGTTAAAGAATTTGAACCACAAAAACATTGTAAAGTATCTTGGATCTTCAAAGACAAAAAGTCACCTGCACATAGTTCTCGAGTATGTGGAGAATGGCTCACTTGCAAATATTATCAAGCCAAATAAATTTGGACCTTTTCCAGAATCATTGGTTGCAGTATATATTGCCCAGGTGTTGGAAGGTTTGGTTTATCTACACGAACAAGGTGTTATCCATCGGGATATTAAGGGTGCAAACATATTGACAACTAAAGAGGGTCTTGTCAAACTTGCTGATTTTGGTGTTGCAACAAAATTAACAGAGGCTGATGTTAACACTCATTCAGTTGTTGGAACACCTTACTGGATGGCCCCAGAGGTTATAGAAATGTCTGGGGTTTGTGCAGCTTCCGACATTTGGAGTGTTGGCTGTACGGTTATTGAACTTCTTACATGTGTACCTCCTTATTATGATTTGCAGCCTATGCCGGCTCTTTTCCGTATTGTCCAGGATGAGCATCCACCAATTCCAGATAGCCTTTCACCCGATATTACTGATTTTCTGCTTCAATGCTTTAAGAAGGATGCTAGACAAAGGCCTGATGCTAAAACTCTGCTGTCTCACCCCTGGATTCAAAACTGTAGACGTGCCCTGCAGTCTTCTCTTCGTCATAGTGGAACACTAAGAAATATAGAGGAAGATGATTCTGCAGGTGCAGAAGTTTCTGGTGGTTATCATAAGAGTGCTTATGAAAGCTCTTCTGTGGGGAAAGAGGACTCTGCAAAAGTGCTACAAACTGTGGCTGCTGATAGTGGCAAATCTCATGAAGACAATGCCTCAGATTCTAATTTTCCAAACGAAAGAACAGAGAAAGCAGATGATGTTCCATCAGATCAGGTTCTTACCTTAGCCATTCATGAGAAGTCATTTCTACAAACTGATTCTAGCAAACTCTCTTCTAATAGAGAAGTGCTTAGTTCCGAGCCTATTGGCAATCATGAAATTTCAAATGCTAAAGACCTTCATGAAGTTACAATGAATGGAGAAATTGGATCTCCACGAGGAATGGCTAGTAAGGTTGGAGGAAAAGACAGTTCTGTAAACAATGGCAACAAATCATTTGCTTTTGGGCCAAGAGGTCAAGATAATGGTTCCCTTAAgGCAATGAAGATGCCAACCACTGTGGAAGGAAATGAGCTGAGTAGATTTAGTGACCCACCAGGAGATGCCTACTTAGATGATTTATTTCATCCATTGGATAAACAACCTGGGGAGGTTGTTGCAGAGGCGTCCACATCTACATCCACTTCACATATGGCTAAAGGTAATGCATCTACAATTGATGGTGGGAAAAATGACCTGGCTAAAGAGCTGAGGGCGACAATTGCTCGAAAGCAATGGGAGAAGGAAAGTGAAATTGAACAGGCAAACAATGGTGGGAATCTTTTGCACCGAGTGATGATAGGTGTTCTAAAAGATGATGTGATTGATATAGATGGTTTGGTCTTCGATGAAAAACTTCCTGGAGAGAACCTTTTTCCTTTGCAGGCTGTTGAGTTCAGCAGACTAGTCGGTTCATTAAAACCAGAGGAATCAGAAGACGTGATTGTTTCTGCATGTCAGAAACTTATTGGTATATTTCACCAACGTCCAGAGCAGAAGATTGTTTTTGTTACCCAGCATGGTTTACTTCCTCTAACAGACTTGCTGGAAGTTCCTAAAACACGTGTCATATGTTCTGTGCTTCAGCTTATAAATCAAATAGTTAAAGACAACACCGATTTTCTAGAAAATGCATGTCTTGTTGGATTGATTCCTGCAGTCACAAGCTTTGCAGTACCTGATCGTCCCCGAGAGATTCGTATGGAAGCAGCTTATTTTTTGCAGCAACTTTGTCAGTCAAGTTCTTTGACATTACAAATGTTTATAGCTTGCCGTGGGATACCTGTTTTGGTGGGATTTCTTGAGGCTGATTATGCCAAGTACAGGGAGATGGTTCATCTGGCTATTGATGGCATGTGGCAGGTATTTAAGCTTCAGCAGTCAACGCCTAGAAATGATTTTTGCCGGATAGCTGCTAAGAATGGAATACTTCTCAGGCTTATAAATACGCTTTATAGCTTAAATGAGTCAACTCGACTAGCTTCTAGCTCAGCTGGGGGTGGATTTTCAGTTGATGGTTCAGCCCAACGCCCACGATCTGGTATCTTGGATCCTACACACCCTTACATAAATCAGAATGAGGCAGTGCTCTCTTCAGTAGATCAGCAAGACCCCCCTAAAGTGAGACGTGGAGTACCTGATCATCACTTAGAACCTTCACATCCTTCATCCTCCAATCCTCGAAAATCAGATGCTAACTACCCTGTGGATGTTGATAGACACCAATCAAGCAATGCAGCAGCTGATGTTGTGTCACTGGAGAAGAGTTCGACCCAAGCATCCAGAGAATCTTCAGCAGGTGCATTGAAAGAGCGAGAGAATATGGACCGTTGGAAAACTGATCCTTCTCGAGCGGATGTTGAATCCAGACAGCAACGTATTTCTACTAACAGGACATCAACTGATAGGCCACCAAAATTAACAGATCCTTCATCAAATGGGTTATCAGTAATAGGAGCCACGCACCAAGAGCAAGTTAGGCCTCTTCTTAGCTTGTTGGAGAAAGAGCCCCCATCTGGACGCTTTTCTGGACAACTTGAGTATGTACGTCAGTTTTCAGGATTAGAAAGACATGAAAGTGTGCTTCCTTTGTTACATGCCtctgaaaagaaaacaaatggtGAACTAGACTTTTTGATGGCAGAATTTGCAGATGTTTCTCAACGTGGAAGGGAAAATGGAAATATTGACTCCAGTGCTAGAGTGTCTCATAAAGTCACTCCCAAGAAATTAGGGACTTTGGGTTCCAGTGAAGGAGCTGCTTCCACGTCTGGGATTGCATCACAGACAGCATCAGGTGTACTGTCTGGTTCAGGTGTTCTAAATGCTAGACCAGGTAGTGCTACTTCATCTGGGCTACTTTCCCACATGGTTTCATCACTGAATGCAGAAGTTGCCAGAGAGTATCTAGAGAAAGTGGCAGATCTTCTGCTTGAGTTTGCACAAGCAGACACAACAGTGAAATCTTACATGTGTAGCCAAAGCTTGCTCAGTCGTCTTTTCCAGATGTTTAATAGGGTGGAGCCTCCTATTTTGTTGAAGATACTGAAGTGTATTAATCATCTGTCAACTGATCCAAATTGCTTAGAAAATCTTCAGCGTGCTGAAGCAATAAAATACTTGATACCAAATCTTGAACTTAAAGAAGGGTCTCTTGTATCAGAGATACATCATGAGGTCTTGAACGCACTATTCAATTTATGCAAGATAAATAAGAGGAGACAAGAACAAGCAGCTGAAAATGGAATCATTCCCCATTTGATGCAATTCATCACATCAAATTCTCCCTTGAAACAATATGCATTGCCTCTGTTATGTGACATGGCTCATGCATCTCGCAATTCAAGGGAGCAGTTAAGGGCCCATGGTGGTTTGGATGTCTATTTGAACCTTCTCGAGGATGAGCTTTGGTCTGTGACAGCTCTTGACTCTATTGCTGTTTGTTTAGCCCACGATAATGATAATAGGAAAGTTGAACAAGCATTGCTGAAAAAGGATGCAGTTCAGAAGCTTGTGAAGTTCTTCCAGTGCTGTCCAGAGCAGTATTTTGTACACATATTGGAGCCATTCTTGAAAATCATCACAAAATCTGCAAGGATCAATACCACATTGGCTGTTAATGGATTAACACCATTGCTCATTGCAAGGCTAGATCATCAGGATGCTATAGCTCGTCTTAATTTACTCAGGCTAATAAAGGCTGTTTATGAGCATCACCCTCAGCCCAAGAAGTTGATTGTGGAAAATGATCTACCTGAAAAACTTCAAAACTTAATAGGGGAACGGAGAGATGGACAAGTGTTGGTCAAACAGATGGCTACTTCATTACTTAAAGCACTACACATAAACACCGTTTtgtaa 4212 0.4138 MSRQTTSSAFTKSKTLDNKYMLGDEIGKGAYGRVYKGLDLENGDFVAIKQVSLENIAQEDLNIIMQEIDLLKNLNHKNIVKYLGSSKTKSHLHIVLEYVENGSLANIIKPNKFGPFPESLVAVYIAQVLEGLVYLHEQGVIHRDIKGANILTTKEGLVKLADFGVATKLTEADVNTHSVVGTPYWMAPEVIEMSGVCAASDIWSVGCTVIELLTCVPPYYDLQPMPALFRIVQDEHPPIPDSLSPDITDFLLQCFKKDARQRPDAKTLLSHPWIQNCRRALQSSLRHSGTLRNIEEDDSAGAEVSGGYHKSAYESSSVGKEDSAKVLQTVAADSGKSHEDNASDSNFPNERTEKADDVPSDQVLTLAIHEKSFLQTDSSKLSSNREVLSSEPIGNHEISNAKDLHEVTMNGEIGSPRGMASKVGGKDSSVNNGNKSFAFGPRGQDNGSLKAMKMPTTVEGNELSRFSDPPGDAYLDDLFHPLDKQPGEVVAEASTSTSTSHMAKGNASTIDGGKNDLAKELRATIARKQWEKESEIEQANNGGNLLHRVMIGVLKDDVIDIDGLVFDEKLPGENLFPLQAVEFSRLVGSLKPEESEDVIVSACQKLIGIFHQRPEQKIVFVTQHGLLPLTDLLEVPKTRVICSVLQLINQIVKDNTDFLENACLVGLIPAVTSFAVPDRPREIRMEAAYFLQQLCQSSSLTLQMFIACRGIPVLVGFLEADYAKYREMVHLAIDGMWQVFKLQQSTPRNDFCRIAAKNGILLRLINTLYSLNESTRLASSSAGGGFSVDGSAQRPRSGILDPTHPYINQNEAVLSSVDQQDPPKVRRGVPDHHLEPSHPSSSNPRKSDANYPVDVDRHQSSNAAADVVSLEKSSTQASRESSAGALKERENMDRWKTDPSRADVESRQQRISTNRTSTDRPPKLTDPSSNGLSVIGATHQEQVRPLLSLLEKEPPSGRFSGQLEYVRQFSGLERHESVLPLLHASEKKTNGELDFLMAEFADVSQRGRENGNIDSSARVSHKVTPKKLGTLGSSEGAASTSGIASQTASGVLSGSGVLNARPGSATSSGLLSHMVSSLNAEVAREYLEKVADLLLEFAQADTTVKSYMCSQSLLSRLFQMFNRVEPPILLKILKCINHLSTDPNCLENLQRAEAIKYLIPNLELKEGSLVSEIHHEVLNALFNLCKINKRRQEQAAENGIIPHLMQFITSNSPLKQYALPLLCDMAHASRNSREQLRAHGGLDVYLNLLEDELWSVTALDSIAVCLAHDNDNRKVEQALLKKDAVQKLVKFFQCCPEQYFVHILEPFLKIITKSARINTTLAVNGLTPLLIARLDHQDAIARLNLLRLIKAVYEHHPQPKKLIVENDLPEKLQNLIGERRDGQVLVKQMATSLLKALHINTVL 1403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3013 1403 SMART arm_5 613 653 IPR000225 GO:0005515
Ssu3g3013 1403 SMART arm_5 1188 1227 IPR000225 GO:0005515
Ssu3g3013 1403 SMART arm_5 1142 1186 IPR000225 GO:0005515
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 337 358 - -
Ssu3g3013 1403 PANTHER MAP KINASE KINASE KINASE 2 1362 - -
Ssu3g3013 1403 Gene3D Transferase(Phosphotransferase) domain 1 17 305 - -
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 779 931 - -
Ssu3g3013 1403 PRINTS Tyrosine kinase catalytic domain signature 200 222 IPR001245 GO:0004672|GO:0006468
Ssu3g3013 1403 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Ssu3g3013 1403 PRINTS Tyrosine kinase catalytic domain signature 96 109 IPR001245 GO:0004672|GO:0006468
Ssu3g3013 1403 PRINTS Tyrosine kinase catalytic domain signature 134 152 IPR001245 GO:0004672|GO:0006468
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 836 882 - -
Ssu3g3013 1403 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 2 1362 - -
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 883 905 - -
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 495 514 - -
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 331 358 - -
Ssu3g3013 1403 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Ssu3g3013 1403 Pfam Protein kinase domain 21 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3013 1403 CDD STKc_Cdc7_like 19 274 - -
Ssu3g3013 1403 Gene3D - 575 782 IPR011989 -
Ssu3g3013 1403 SUPERFAMILY ARM repeat 1070 1396 IPR016024 -
Ssu3g3013 1403 SUPERFAMILY Protein kinase-like (PK-like) 17 275 IPR011009 -
Ssu3g3013 1403 ProSiteProfiles Protein kinase domain profile. 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3013 1403 SUPERFAMILY ARM repeat 584 779 IPR016024 -
Ssu3g3013 1403 MobiDBLite consensus disorder prediction 906 931 - -
Ssu3g3013 1403 Gene3D - 1058 1400 IPR011989 -
Ssu3g3013 1403 SMART serkin_6 20 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g3013 1403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g3013 Ssu-Chr3 85302784 85323779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3013 1 1403 MAP Kinase Kinase Kinase AT3G13530 71.359 0.0 1988
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE-Pl Ssu3g3013 Pkinase 3.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3013 - - gmx:100813256 2571.19