Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g3006 ATGCTTCTGGACAAGAATGTTATTCAGGAAACCCATTATGAGGTTCTCAATGTCAAGGAAGATGCAAATTATGAAGAAATTCGTGCGAGTTACCGTAGTGCTGTACTCAGTTTACATCCTGATAAGCTATTAAAGACGTCCGAGACATCCAGCAGTAATCAAACAGCTGGAGAGAGATTTCTCAAAGTACAGAAGGCATGGGAGATTCTGAGTAATTCAAGCTCCcgtttattttatgataatgaGCTGCGAAGTTCAAGGCAGGATGTCTTGGCTGCTGAAGTTGCTGAAGATTTGAGCTTACAGGATATGGTGATTGAAGATGCTGGAGAAGTATTGGAACTGTTTTATCAATGCCGATGTGGTGATTACTTCTCTGTAGACTCGTTGGAATTGAAGAAAATGGGGTATTCCTTATTGAGGGAGGGAAGTAGGATATCTATACTCAATGTTGATAGTTTACCAGGATCAGTGATTCTTCCATGTGGATCTTGTTCGTTAAAAGCTCGTCTGCTAATCAATATGGATGACAATTGA 537 0.3929 MLLDKNVIQETHYEVLNVKEDANYEEIRASYRSAVLSLHPDKLLKTSETSSSNQTAGERFLKVQKAWEILSNSSSRLFYDNELRSSRQDVLAAEVAEDLSLQDMVIEDAGEVLELFYQCRCGDYFSVDSLELKKMGYSLLREGSRISILNVDSLPGSVILPCGSCSLKARLLINMDDN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g3006 178 SUPERFAMILY Chaperone J-domain 10 83 IPR036869 -
Ssu3g3006 178 ProSiteProfiles DPH-type metal-binding (MB) domain profile. 95 174 IPR007872 -
Ssu3g3006 178 PANTHER DPH3 HOMOLOG-RELATED 1 176 IPR044248 GO:0017183|GO:0046872
Ssu3g3006 178 Pfam CSL zinc finger 99 172 IPR007872 -
Ssu3g3006 178 SMART dnaj_3 10 75 IPR001623 -
Ssu3g3006 178 CDD DnaJ 11 72 IPR001623 -
Ssu3g3006 178 Gene3D DPH Zinc finger 88 178 IPR036671 -
Ssu3g3006 178 PANTHER DIPHTHAMIDE BIOSYNTHESIS PROTEIN 4 1 176 - -
Ssu3g3006 178 PRINTS DnaJ domain signature 55 75 IPR001623 -
Ssu3g3006 178 PRINTS DnaJ domain signature 13 31 IPR001623 -
Ssu3g3006 178 PRINTS DnaJ domain signature 31 46 IPR001623 -
Ssu3g3006 178 SUPERFAMILY CSL zinc finger 96 177 IPR036671 -
Ssu3g3006 178 Pfam DnaJ domain 11 80 IPR001623 -
Ssu3g3006 178 ProSiteProfiles dnaJ domain profile. 11 83 IPR001623 -
Ssu3g3006 178 Gene3D DnaJ domain 2 87 IPR036869 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g3006 12 94 C2H2 Transcription Factor Family AT1G74250 39.759 2.49e-11 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g3006 K17867 - gmx:100814856 318.546