Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2990 ATGGCTCCCAAACGAGGTGGAAAGGCTCCGGTTCTTGCCGCTAAGAAGAAGCCTGAGAAGGTTACGAATCCGCTGTTCGAGAAGCGTGCGAAGCAGTTCGGAATCGGAGGGGCTTTGCCTCCGAAGAGAGACCTGACTCGGTTTGTGAAGTGGCCGAAGACCGTTCAGATTCAGAGAAAGAAGAGGATTCTGAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTCACCAAGACTCTTGACAAAAACCTAGCAACAAGTCTGTTCAAGATACTTTTGAAGTACAGACCTGAGGATAAAGCAGAAAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACTATTGAGGCTAAGAAGCCTATCGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGcAGAACAAAGCGCAGCTTGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTGAAGGGAAAGGCACGCTTGGGAATGGTTGTCCATAAGAAAACTGCATCTGTTTTGTGCTTGACAACCGTTAAGAATGAAGATAAATTGGAGTTTAGCAGAGTCTTGGAGGCTATCAAGGCTAACTTCAACGACAAATATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAGACAAGGGCAAAGGAAAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG 783 0.4649 MAPKRGGKAPVLAAKKKPEKVTNPLFEKRAKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTIEAKKPIVVKYGLNHVTYLIEQQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGMVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 91 104 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 219 239 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 30 47 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 67 86 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 187 211 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 125 145 IPR001921 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A family signature 47 64 IPR001921 -
Ssu3g2990 260 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2 258 - -
Ssu3g2990 260 Coils Coil 102 122 - -
Ssu3g2990 260 SUPERFAMILY L30e-like 89 231 IPR029064 -
Ssu3g2990 260 ProSitePatterns Ribosomal protein L7Ae signature. 168 185 IPR004037 GO:0042254|GO:1990904
Ssu3g2990 260 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 117 207 IPR004038 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A/RS6 family signature 165 175 IPR018492 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A/RS6 family signature 129 143 IPR018492 -
Ssu3g2990 260 PRINTS Ribosomal protein L7A/RS6 family signature 175 189 IPR018492 -
Ssu3g2990 260 PANTHER BNAA03G47020D PROTEIN 2 258 - -
Ssu3g2990 260 Gene3D - 51 235 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2990 Ssu-Chr3 85048684 85050493 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2990 1 260 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 85.000 2.34e-165 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2990 K02936 - gmx:100792324 479.944