LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu3g2990	ATGGCTCCCAAACGAGGTGGAAAGGCTCCGGTTCTTGCCGCTAAGAAGAAGCCTGAGAAGGTTACGAATCCGCTGTTCGAGAAGCGTGCGAAGCAGTTCGGAATCGGAGGGGCTTTGCCTCCGAAGAGAGACCTGACTCGGTTTGTGAAGTGGCCGAAGACCGTTCAGATTCAGAGAAAGAAGAGGATTCTGAAGCAGAGGTTGAAGGTTCCCCCAGCTTTGAACCAGTTCACCAAGACTCTTGACAAAAACCTAGCAACAAGTCTGTTCAAGATACTTTTGAAGTACAGACCTGAGGATAAAGCAGAAAAGAAGGAGAGGCTTTTGAAAAGGGCTCAGGCAGAGGCTGAAGGCAAAACTATTGAGGCTAAGAAGCCTATCGTTGTGAAGTATGGTCTCAATCATGTTACCTACCTTATTGAGCAGcAGAACAAAGCGCAGCTTGTTGTGATTGCTCATGATGTGGACCCAATTGAATTGGTTGTCTGGCTTCCAGCATTGTGCAGGAAGATGGAAATTCCATACTGCATTGTGAAGGGAAAGGCACGCTTGGGAATGGTTGTCCATAAGAAAACTGCATCTGTTTTGTGCTTGACAACCGTTAAGAATGAAGATAAATTGGAGTTTAGCAGAGTCTTGGAGGCTATCAAGGCTAACTTCAACGACAAATATGACGAGTACAGAAAGAAGTGGGGTGGTGGAATCATGGGATCCAAATCCCAAGCCAAGACAAGGGCAAAGGAAAAGCTTCTTGCCAAGGAAGCTGCTCAGAGGATGTCTTAG	783	0.4649	MAPKRGGKAPVLAAKKKPEKVTNPLFEKRAKQFGIGGALPPKRDLTRFVKWPKTVQIQRKKRILKQRLKVPPALNQFTKTLDKNLATSLFKILLKYRPEDKAEKKERLLKRAQAEAEGKTIEAKKPIVVKYGLNHVTYLIEQQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGMVVHKKTASVLCLTTVKNEDKLEFSRVLEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKEKLLAKEAAQRMS	260

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	91	104	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	219	239	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	30	47	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	67	86	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	187	211	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	125	145	IPR001921	-
	Ssu3g2990	260	PRINTS	Ribosomal protein L7A family signature	47	64	IPR001921	-
	Ssu3g2990	260	PANTHER	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	2	258	-	-
	Ssu3g2990	260	Coils	Coil	102	122	-	-
	Ssu3g2990	260	SUPERFAMILY	L30e-like	89	231	IPR029064	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu3g2990	Ssu-Chr3	85048684	85050493	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu3g2990	1	260	Cytoplasmic Ribosomal Protein Gene Family	AT3G62870	85.000	2.34e-165	456

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu3g2990	K02936		-	gmx:100792324	479.944

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