Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2989 ATGAGCTCTCGGACGGGCAAGGGCCCTGCAGTCAGAAGTTACCGGCGGAGAAAGACTGCTTTGGACCTTGACCTTAACCGTGTACCTGCTGGTGAGAATCGAGAGCAGGAGGGACCTTCAAATCAGCCAGGGCCTCAAGAAGTTCAAGTTGAACGGCAGCCACAGGTTACTCAACCTCAACCTCCGATGATTGATGTGGAAgccattgatgatgatgttgttgaATGTACACCAAGGGCTTTTGCCGAGGCTAAAAACAATTCAAGAAGAAATCGTGGGAGGACTATAGTTGATGTTGATCTAGAAGATCAGACTAGGGTAACCAACAATAATCACAACAAACGCAGAAGAGAATTGCCAACTCaaactattattaatagtgataagtatataaatttggAAGGCAGTGGCAGTTCTATGGGGGGAAATGTTAAAAAGCCACCCGAACCTCCAAAGGACCCTGTCTTCAACTGTCCAATATGTATGGGCCCTTTGGTAGAAGAAATGTCGACAAGGTGTGGTCATATTTTTTGCAAGAATTGCATCAAGGCTGCTATAAGTGCTCAGGGTAAATGTCCTACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTCCCATCAACTAGTTGA 642 0.419 MSSRTGKGPAVRSYRRRKTALDLDLNRVPAGENREQEGPSNQPGPQEVQVERQPQVTQPQPPMIDVEAIDDDVVECTPRAFAEAKNNSRRNRGRTIVDVDLEDQTRVTNNNHNKRRRELPTQTIINSDKYINLEGSGSSMGGNVKKPPEPPKDPVFNCPICMGPLVEEMSTRCGHIFCKNCIKAAISAQGKCPTCRKKITVKELIRVFLPSTS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2989 213 SMART ring_2 158 195 IPR001841 -
Ssu3g2989 213 PANTHER ELFLESS, ISOFORM B 2 213 - -
Ssu3g2989 213 SUPERFAMILY RING/U-box 157 202 - -
Ssu3g2989 213 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Ssu3g2989 213 MobiDBLite consensus disorder prediction 35 60 - -
Ssu3g2989 213 Pfam Zinc finger, C3HC4 type (RING finger) 157 195 - -
Ssu3g2989 213 MobiDBLite consensus disorder prediction 15 31 - -
Ssu3g2989 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 211 IPR013083 -
Ssu3g2989 213 PANTHER RING ZINC FINGER-RELATED 2 213 - -
Ssu3g2989 213 MobiDBLite consensus disorder prediction 1 60 - -
Ssu3g2989 213 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2989 Ssu-Chr3 85039841 85041982 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2989 12 212 C3H Transcription Factor Family AT5G48655 52.217 2.97e-52 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2989 K22651 - gmx:100792853 320.857