Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2987 ATGGTAGTGATCATGcaacagcagcagcagcaacagCAGAACCCCTCTGCACTGGTGCCACAGCTCAAGAATCCCCAAtcctccgccgccgccgccaccgCCACCGCCTCTCTTAGGTCACCCTCCGCCCAGCCCCAGCTCCCCTCGCCGCTCTCCGTCGTCGCTCCCCTCCGCCAACCCCTACTCGCCTCGCATCCACCGCCCGTCGCGGCGGTGGAGCCCGCTTTGACGGCGGTGCCGACGTGTCCGTTGGTCAGAGTCCGGCTCTCAGACATTGCCCCCTATGACGGGGCACCGGCGGGGCCCTATCTCAGAGCAATGGAGGCATTGTGTGGCTCTCTGTTGCGCCACAATGCTGCGTTGATCGAATTGGGGAGCGAAGACACTGCTCTGATGCGATGCGGCTTGGAAGGTGCGAGGTTGTTTTTCAGAAGTAGGGCCCACCTCGGTGTTGGGAAGGGTAGCCGTGGGGTTTACATGTACAGAGCAGGAAGGGCTTTTGAGGATTGGGATTCTTCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATAGGAAAGGCGTGTCGATCCGCATTGTGTGCCATTGCAAGACATTTGCGGCTTAGAAGCGATGTTTTTAACCATTTGCTTGATGATGCTCCATTGCCTGCCAATGAGGTGTCTTCGTCAGTTCTTGTTGTGACCTACGCACATGCTTCTTTGCAAAATGGAAGAGGTGCCATTGGAGGCGGTAAGCCTACCATGAATGGTGAAGTTGAGAAGGGATTGTTGACATTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCTAGTGGTCGCTGGTATCTGGCAGACAGTGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCAAGGCACTTAGCCATGCTACTGCTGGCCTACGTCCTGCTGCATCATATAGAGCTTCTCCTGATTATTTTCTGAGTCCTAATGGCGGAGGAAGGACTTCTCTTGCATATAGACTCATGCCACAGGGCAATGCTATATTAGACTGTTCCCCAATTGCAGCAGCTGGCCATGTTATTCGCCAAAGCTATGTTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCCGAAGAACTGATAGACAGCAGATGTGATAATGCTGATGTTGCTTCTCAAAACAATGTGAATAAGGAGTTATCATTAAGAAGTGTTCTATCAGATCCTTTATCTGGCACATTCCTTGAAGATGCCATGCTTGTCTCATGTGGACATTCTTTTGGTGGTCTCATGCTGAGGAGAGTCATTGAAACATCAAGATGTACTCTCTGCAATGCAGAAATTGAAACTGGTTCTTTGATCCCTAATCTTGCTCTTAGAGCAGCAGCTGCTGCTGTCAAGCATGAGGATGATCGGAGGTTATTTCGTAATGCTGCTCTCCGAAAGCGGCGGAAAGAAATGGGTGACCAAATGGATTCAATGAGAAGAGTGAACAGGGAAAATGGAGATTTTCATGCTGCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCAGAAAAATTTGTTGGGAAAGAAGCTGTGATTACATCTCAGTGTCTCAATGGCTGGTATTTGCTCAAGATTATTGGAACTGGAGAGAATGTCCGCCTGCAGTACCGTTCTCTTAGGAAGCTCTTAAACTCACCAGCGGATCAGTGTCCCTCACAGCCACTTCAAAATAGCAGCtcttaa 1752 0.4806 MVVIMQQQQQQQQNPSALVPQLKNPQSSAAAATATASLRSPSAQPQLPSPLSVVAPLRQPLLASHPPPVAAVEPALTAVPTCPLVRVRLSDIAPYDGAPAGPYLRAMEALCGSLLRHNAALIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRAFEDWDSSPPCMADIFRCIGKACRSALCAIARHLRLRSDVFNHLLDDAPLPANEVSSSVLVVTYAHASLQNGRGAIGGGKPTMNGEVEKGLLTLISSDTPGLQVCDPSGRWYLADSGSGPGDLLLITGKALSHATAGLRPAASYRASPDYFLSPNGGGRTSLAYRLMPQGNAILDCSPIAAAGHVIRQSYVPISVSQFMDDLAAEELIDSRCDNADVASQNNVNKELSLRSVLSDPLSGTFLEDAMLVSCGHSFGGLMLRRVIETSRCTLCNAEIETGSLIPNLALRAAAAAVKHEDDRRLFRNAALRKRRKEMGDQMDSMRRVNRENGDFHAADGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGTGENVRLQYRSLRKLLNSPADQCPSQPLQNSSS 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2987 583 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 79 581 - -
Ssu3g2987 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 393 462 IPR013083 -
Ssu3g2987 583 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 79 581 - -
Ssu3g2987 583 Gene3D - 155 379 IPR027443 -
Ssu3g2987 583 SUPERFAMILY Clavaminate synthase-like 167 343 - -
Ssu3g2987 583 MobiDBLite consensus disorder prediction 1 29 - -
Ssu3g2987 583 SUPERFAMILY RING/U-box 395 460 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2987 Ssu-Chr3 85006517 85018435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2987 394 580 Plant U-box Gene Family AT5G05230 39.362 4.32e-39 145