Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2982 ATGGCATCGGCCTTCGTGAAGCTCGATGATTCCCCAATGTTCCAGAAGCAGTTATTTTCTCTTGAAGAAACAACTGATGAGCTAAAGGATCGGTGCCAGCAACTATATAAAGGGTGCAAGAAGTTTATGACAGCTTTGGGGGAAGCATATAATGGAGAAATTGCCTTCGCTGATTCATTAGAAATATTTGGTGGTGGCCAAGATGACCCTGTCAGTGTATCAATTGGAGggCCTGTCATATCTAAGTTTATTAACACGCTGCGTGAGCTAGCTACTTTTAAAGAGCTTCTTCGTTCACAGGTAGAGCATGTGTTGATTGACCGGCTGACGGAGTTTATGAATGTCGATTTGCAAGATGCaaagGATTCTCGCCGTCGTTTTGACAAAGCTGTGCATTCTTATGATCAgTCACGAGAAAAGTTTGTCTCTTTGAAGAAGAATACACCACAAGATGTTGTTGCTGAATTGGAAGAGGATctacaaaattcaaaatcaacatTTGAAAAAAGTCGCTTCAATCTAGTAAATGCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTTTTGGAGTCCATTAGTGCAATAATGGATGCTCATTTGAGATATTTTAAGCTGGGGTATGACTTACTCAGCCAAATGGAGCCCTATATTCACCAGGTGCTAACATACGCACAGCAATCTAAAGAAGTGGCTAATATTGAGCAAGATAAGCTTGCTAAGCGGATTCAGGAATACAGAACACAAGCAGAGCTGGAGAATATACGAGCTTCTAGCAATTATACAGAAACCATGCCAGGTTCCGATGGCACACATGTTGTAGGTTTGAACTCTTACAAAAGTTTTGAAGCAGGGATGCAGTCTGCAGCAACCAAAGGGGAGGTTCAAACAGTTAAACAGGGCTATCTGTTAAAACGATCTGCAAGCATGCGTGGAGATTGGAAACGGAGGTTCTTTGTACTTGATAACCAAGGGAATTTATATTATTACAGAGTGAAGGGTGCCAAACCCATGGGCTCTCAGTCATATAATTATACTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGACACAACAGGGCTGCGTCGCTAAATGAGGATATTTTAGGTTGTTTTGCAGTTGATCTATGCACATCCACTATAAAGATGGATGCAGAGGATACAGACCTACGACTTTGCTTTCGGATAATTTCTCCCTCAAAAACATACACACTACAGGCTGAAAATGAAGCTGATAGGATGGACTGGATAAACAAAATTACTGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCAATATGGTAGAGTGCATTCAGAGAATAAAAACTCAGCAATTGGTGCTTCTTTGGCAAGTCAATCAGAGGATAGTCATAAATCTTTGAGGGATGACGTATATTCCAAGGAAGTGGGTAGTGTGTCTAAGATTTTAAGGGGAATTCCTGGGAATGATAAATGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTCTAAACCTTGGCATATTGCTGTGTATTGAATGCTCTGGAGTGCATCGAAATCTTGGAGTTCATGTCTCAAAGGTGAGATCTATAACATTAGATGTTAAGGTTTGGGAACCCACAATTTTGGAGTTATTTGATAACTTAGGTAATGCTTATTGCAATTCTATCTGGGAGGGCTTGCTTCTACTTGATCATGAAAGGGTAGGTGAATCAAATGTGCCTATGAAACCTTGCTCTACAGATGCCTTCCAAAACAAGGAGAAGTACATCCAAGCAAAGTACGTAGAGAAATCACTAATCATACGAGAGGAGGATATACCCGAGAATCCTTCAGTTTCCGTAAGAATCTGGCAAGCAGTTCAGGTTGTAAATGTACAAGAAGTGTATCGAATTATTGTCACATCAACTTCAAATATGATAAACACAAAATACAATGATGAGGTTCACCATGCTGATCAGCATGATCCTGAAGCCTGTCTGAGAGTTGAAGAGACTAATGAGACAGAGAGGTGTTTCCGTGGCTGGTCATTATTACATCTGGCATGTCATTCTGACAATGCACTGATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATGTAAACATGCGTGACTATCATGGAAGAACTCCCTTGCACCATTGCATTTCAAGTGGGAAAAATCAGTTGGCAAAGTTTCTATTGAGAAGGGGTGCAAGGCCTTCAGTTAAAGATGCTGGCGGACTCACTGTACTTGAAAGAGCAATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCATGCTTGCTGAATGCCAGTGA 2316 0.4059 MASAFVKLDDSPMFQKQLFSLEETTDELKDRCQQLYKGCKKFMTALGEAYNGEIAFADSLEIFGGGQDDPVSVSIGGPVISKFINTLRELATFKELLRSQVEHVLIDRLTEFMNVDLQDAKDSRRRFDKAVHSYDQSREKFVSLKKNTPQDVVAELEEDLQNSKSTFEKSRFNLVNALMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEVANIEQDKLAKRIQEYRTQAELENIRASSNYTETMPGSDGTHVVGLNSYKSFEAGMQSAATKGEVQTVKQGYLLKRSASMRGDWKRRFFVLDNQGNLYYYRVKGAKPMGSQSYNYTRSSEQNSGMFGRFRSRHNRAASLNEDILGCFAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWINKITGAITSLFNSQFLQQPQYGRVHSENKNSAIGASLASQSEDSHKSLRDDVYSKEVGSVSKILRGIPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHVSKVRSITLDVKVWEPTILELFDNLGNAYCNSIWEGLLLLDHERVGESNVPMKPCSTDAFQNKEKYIQAKYVEKSLIIREEDIPENPSVSVRIWQAVQVVNVQEVYRIIVTSTSNMINTKYNDEVHHADQHDPEACLRVEETNETERCFRGWSLLHLACHSDNALMVELLLQFGADVNMRDYHGRTPLHHCISSGKNQLAKFLLRRGARPSVKDAGGLTVLERAMEMGAITDEELFIMLAECQ 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2982 771 Pfam PH domain 298 429 IPR001849 -
Ssu3g2982 771 SMART PH_update 297 432 IPR001849 -
Ssu3g2982 771 CDD ArfGap 484 599 - -
Ssu3g2982 771 Gene3D - 616 763 IPR036770 -
Ssu3g2982 771 ProSiteProfiles Ankyrin repeat profile. 678 710 IPR002110 GO:0005515
Ssu3g2982 771 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 767 - -
Ssu3g2982 771 CDD PH_ACAP 299 434 - -
Ssu3g2982 771 Pfam BAR domain of APPL family 8 230 - -
Ssu3g2982 771 SMART arf_gap_3 480 612 IPR001164 GO:0005096
Ssu3g2982 771 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Ssu3g2982 771 PANTHER CENTAURIN/ARF 3 767 IPR045258 GO:0005096
Ssu3g2982 771 ProSiteProfiles Ankyrin repeat profile. 711 743 IPR002110 GO:0005515
Ssu3g2982 771 SUPERFAMILY BAR/IMD domain-like 8 319 IPR027267 -
Ssu3g2982 771 SUPERFAMILY ArfGap/RecO-like zinc finger 482 605 IPR037278 -
Ssu3g2982 771 ProSiteProfiles PH domain profile. 296 430 IPR001849 -
Ssu3g2982 771 PRINTS HIV Rev interacting protein signature 534 555 IPR001164 GO:0005096
Ssu3g2982 771 PRINTS HIV Rev interacting protein signature 511 528 IPR001164 GO:0005096
Ssu3g2982 771 PRINTS HIV Rev interacting protein signature 492 511 IPR001164 GO:0005096
Ssu3g2982 771 CDD BAR_SFC_plant 16 217 IPR035670 -
Ssu3g2982 771 Gene3D Arf GTPase activating protein 461 612 IPR038508 -
Ssu3g2982 771 ProSiteProfiles Ankyrin repeat region circular profile. 678 709 - -
Ssu3g2982 771 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Ssu3g2982 771 SUPERFAMILY Ankyrin repeat 669 763 IPR036770 -
Ssu3g2982 771 SUPERFAMILY PH domain-like 297 444 - -
Ssu3g2982 771 ProSiteProfiles Ankyrin repeat region circular profile. 711 742 - -
Ssu3g2982 771 SMART ANK_2a 678 707 IPR002110 GO:0005515
Ssu3g2982 771 SMART ANK_2a 711 740 IPR002110 GO:0005515
Ssu3g2982 771 Gene3D - 292 448 IPR011993 -
Ssu3g2982 771 Pfam Ankyrin repeats (3 copies) 673 742 IPR002110 GO:0005515
Ssu3g2982 771 ProSiteProfiles ARF GTPase-activating proteins domain profile. 480 612 IPR001164 GO:0005096
Ssu3g2982 771 Coils Coil 229 249 - -
Ssu3g2982 771 Pfam Putative GTPase activating protein for Arf 484 605 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2982 Ssu-Chr3 84948139 84967954 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2982 490 601 C2H2 Transcription Factor Family AT3G07940 40.517 5.19e-18 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2982 K12489 - gmx:100796740 1429.46