Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2976 ATGTCttcgtttttctttttgtctcgCTGCTTTGTCTCTTGCTGTCTCAACCTACTAGATCAGAAGACGATTCCGGAGCACTTCTCGCACTCAAACCTCCATAGACGTTCTCGACGAGCTTCCATGGCGAGAAGGAAGCGACGTGTGCACGTGGCTAGGGGTCAGAGACTGCTTCAACGGAAGAGTGAGAAAGCTAGTGCTGGAACACTCCAACCTAACCGGCACCCTGGATTCGAAGATCTTGAACCGTTTGGACCAACTCCGAGTCCTGAGTTTCAAAGGAAACTCACTCTCCGGCCAAATCCCCGACCTCTCCGCCTTGATCAACCTCAAATCGATTTTCCTCAACGACAACAACTTCTCCGGCGAGTTCCCCGCCTCCGTCGCGCTCCTCCACCGCGTCAAGGTCGTCGTCCTATCCGGAAACAAAATCTCCGGCGACATCCCGGCCTCGCTGCTGAAGCTCCGGCGACTCTACGTCCTCTACCTGCAAGACAACGCGTTCACCGGACACATCCCGGGTTTCAACCAAACCAGCCTCAGGTACCTGAACGTCTCCAACAACCGGCTCTCCGGCGAGATTCCGGTGACCCCCGCATTGATCCGATTCAACGCGTCGTCGTTTTCCGGCAACCCGGGGCTCTGCGGGGAACAGATCCACCAGGCGTGCAGAACGCTGCCGCCGTCGATAAGCCCTGGTTATCCGATGATACCGGGAGGGACGACGACGCGACGACGACGTCGTCCACGTCATCGAACCGCACGAAACTGATGAAGATAATTGGAGGGAGCGTTGGCGGGGTTGCGTTGGCGGTGGTGTGCATGGTTGCGGTGTGGGCGATTAGCAAGAGGCGGAGGAAGAGGGTGGGTTCCGGAACGAGGAGCAAGGGCGGTGCTGACGTGGCGGAAGGGGAGGCTGGCGCGGCGGGAAGTGCGGGAGGAGGAGAAAGGGATAATAAACAAGAGGGTTTTGCGTGGGAAGGCGAGGGTCTTGGGAAATTGGTGTTCTGCGGAGGAGGGGATCGGGAGATGAGTTATAGTTTGGAGGATTTGCTGAAGGCTTCGGCGGAGACTTTGGGGAGGGGTATTATGGGAAGTACGTATAAGGCAGTCATGGAATCCGGGTTCATTGTTACGGTGAAGAGGTTGAAAGATGCTAGGTACCCTGGTTTGGAAGAATTCAGGGCTCACATTCAAGTCCTTGGGAGGCTCACCCACCCTAACTTGGTCCCACTCAGGGCTTACTTCCAGGCTAAGGAGGAACGCCTTCTCGTTTATGATTACTTTCCTAATGGCAGCCTCTTCTCCCTTATTCACgGATCAAAAACATCTGGAGGGGGAAAGCCTCTTCACTGGACATCCTGCCTTAAAATTGCTGAAGATGTAGCAACAGGCCTGCTCTATATCCACCAGAACCCCGGCTTGACACATGGAAACCTGAAATCTTCTAATGTGTTGCTGGGTTCTGACTTTGAGTCATGTCTTACTGATTATGGTCTCACTGTGTTCCTTAATCCTGAGTCGGTGGATGAGCCTAGTGCCACTTCTTTATTCTATAGAGCACCTGAATGCCGCAACTTTCAAAGGTCACAAACTCAGCCAGCTGATGTATACAGCTTCGGGGTCCTTCTTCTAGAGCTTTTAACTGGCAAAACACCCTTCCAAGACCTTGTTCAGACGTATGGTTCAGACATACCTAGGTGGGTTCGGTCAGTGCGTGAAGAAGAGACCGAGTCTGGGGATGACCCTACCTCAGGCACTGAAGCATCTGAAGAGAAGCTTCAGGCTCTTTTGAACATTGCAATGGCATGTGTTTCACTAGTGCCAGGAGAACAGGCCTACAATGAGAGAGGTTTTAAAGATGATAAGAGAAGCAAGAGGGGAGGCTCATGTCTCATCTAA 1902 0.5268 MSSFFFLSRCFVSCCLNLLDQKTIPEHFSHSNLHRRSRRASMARRKRRVHVARGQRLLQRKSEKASAGTLQPNRHPGFEDLEPFGPTPSPEFQRKLTLRPNPRPLRLDQPQIDFPQRQQLLRRVPRLRRAPPPRQGRRPIRKQNLRRHPGLAAEAPATLRPLPARQRVHRTHPGFQPNQPQVPERLQQPALRRDSGDPRIDPIQRVVVFRQPGALRGTDPPGVQNAAAVDKPWLSDDTGRDDDATTTSSTSSNRTKLMKIIGGSVGGVALAVVCMVAVWAISKRRRKRVGSGTRSKGGADVAEGEAGAAGSAGGGERDNKQEGFAWEGEGLGKLVFCGGGDREMSYSLEDLLKASAETLGRGIMGSTYKAVMESGFIVTVKRLKDARYPGLEEFRAHIQVLGRLTHPNLVPLRAYFQAKEERLLVYDYFPNGSLFSLIHGSKTSGGGKPLHWTSCLKIAEDVATGLLYIHQNPGLTHGNLKSSNVLLGSDFESCLTDYGLTVFLNPESVDEPSATSLFYRAPECRNFQRSQTQPADVYSFGVLLLELLTGKTPFQDLVQTYGSDIPRWVRSVREEETESGDDPTSGTEASEEKLQALLNIAMACVSLVPGEQAYNERGFKDDKRSKRGGSCLI 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2976 633 MobiDBLite consensus disorder prediction 289 322 - -
Ssu3g2976 633 ProSiteProfiles Protein kinase domain profile. 353 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2976 633 PANTHER INACTIVE LEUCINE-RICH REPEAT RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE 245 613 - -
Ssu3g2976 633 SUPERFAMILY Protein kinase-like (PK-like) 357 560 IPR011009 -
Ssu3g2976 633 MobiDBLite consensus disorder prediction 35 55 - -
Ssu3g2976 633 Gene3D Phosphorylase Kinase; domain 1 340 428 - -
Ssu3g2976 633 Pfam Protein kinase domain 356 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2976 633 MobiDBLite consensus disorder prediction 122 145 - -
Ssu3g2976 633 Gene3D Transferase(Phosphotransferase) domain 1 429 616 - -
Ssu3g2976 633 MobiDBLite consensus disorder prediction 213 252 - -
Ssu3g2976 633 MobiDBLite consensus disorder prediction 35 163 - -
Ssu3g2976 633 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 245 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2976 Ssu-Chr3 84896126 84901018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2976 253 609 Receptor kinase-like Gene Family AT1G60630 63.435 4.42e-148 442
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu3g2976 Pkinase 2.1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2976 - - gmx:100809866 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2976 3 84896126 84901018 Ssu3g2976 3 84896126 84901018 ECH