Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2973 ATGGCGGCTACTGTGTCTGCGTGGTCAAAGCCCGGCGCGTGGGCCCTCGATTCCGAGGAACACGAAGCGGAGCTCCTTCAGCAGAATCCCAACGACGACGCAACGAAGCCCCTCGCCGACTTCCCTTCCCTGGCCGTCGCCGCCGCCGCCAAGCCCAAGAAGAAGAAGGCCCAAACCTACTCCCTCGCCGAGTTCACCGCCAAGCCCGACGCCGCCTTCGCCGACCAAGATCCCGTCGTCCTCCCCACCGGCCCGCGCCAGCGCACCGCCGAGGAGCTCGACCGCGACCGCAACCGCCTCGGTGGCGGCTTCCGCTCCTACGGCGACCGCCCCCACAGGAACTCCGCCGCCGGCGACGAGTCCTCCAATTCCCGGTGGGGTTCCTCTAGGGTTTCCGACGAGCCCAGGCGAAACGGCGCGTTCGGGGCCAGGGACTCGAACCGCGACCTGCCCCCCTCGCGCGCCGACGAGACCGACAATTGGGCCGCCGCGAAGAAACCCTCCGGGGGGTTCGAGAGGAGGGAGAGGGACAGAGGAGGGTTCTTCGATTCGCAGTCCCGCGCCGACGAATCCGAGAGTTGGGTTTCGAACAAGACCTACGCGCCGTCGGAGGGGAGGCGATTCAACGGCGGCGGCGGTGGGGGGTTCGAGAGGGAGAGGAGGGTGGTCGGGTTCGGTTCCAGCGGCGGCGCGGATTCCGACAACTGGAACAGGAAAAAGGGCGAGTCCAATGTTGGGAGCGAGAGTGCTGGAAGTGGTGGTGGGAGGCCGAGGCTTGTTTTGCAACCTCGTACGCTGTCGGTGAGCAGTGAAGGGGTTGATGGGAAGCCTAAAGGGGTTAACCCATTCGGAGAGGCGCGGCCGAGGGAGCAGGTTTTGGCGGAGAAAGGGCAGGATTGGAAGAAGATTGACGAGCAGCTTGAGAGCACGAAGATTAAGGAGACAACGGGTGATGGCTTTGGGAAGAGGGCTTTTGGGTCTGGAAATGGAGGAGCACGTGCTGGTTTGCCCGAGAATCGCACCGAGAGGAGTTGGAGGAAGCCCCAATCTCATGATGACCGTCCAAAAAGTGCTGAGAAAGTGGAAGATGAACACGTTGAAGAAAATTGA 1110 0.6333 MAATVSAWSKPGAWALDSEEHEAELLQQNPNDDATKPLADFPSLAVAAAAKPKKKKAQTYSLAEFTAKPDAAFADQDPVVLPTGPRQRTAEELDRDRNRLGGGFRSYGDRPHRNSAAGDESSNSRWGSSRVSDEPRRNGAFGARDSNRDLPPSRADETDNWAAAKKPSGGFERRERDRGGFFDSQSRADESESWVSNKTYAPSEGRRFNGGGGGGFERERRVVGFGSSGGADSDNWNRKKGESNVGSESAGSGGGRPRLVLQPRTLSVSSEGVDGKPKGVNPFGEARPREQVLAEKGQDWKKIDEQLESTKIKETTGDGFGKRAFGSGNGGARAGLPENRTERSWRKPQSHDDRPKSAEKVEDEHVEEN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2973 369 MobiDBLite consensus disorder prediction 168 185 - -
Ssu3g2973 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B3 1 361 - -
Ssu3g2973 369 MobiDBLite consensus disorder prediction 88 103 - -
Ssu3g2973 369 MobiDBLite consensus disorder prediction 137 161 - -
Ssu3g2973 369 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B 1 361 IPR010433 GO:0003743
Ssu3g2973 369 MobiDBLite consensus disorder prediction 310 369 - -
Ssu3g2973 369 MobiDBLite consensus disorder prediction 339 369 - -
Ssu3g2973 369 MobiDBLite consensus disorder prediction 186 203 - -
Ssu3g2973 369 MobiDBLite consensus disorder prediction 67 297 - -
Ssu3g2973 369 Pfam Plant specific eukaryotic initiation factor 4B 7 315 IPR010433 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2973 Ssu-Chr3 84867717 84869675 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2973 1 347 Eukaryotic Initiation Factors Gene Family AT4G38710 49.749 3.50e-67 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2973 - - gmx:100820014 587.415