Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2965 ATGGCTTCCCTCTACGATGTGCTTGGAATTTCAATGGGTGCAAGTTGTGTCGAAATAAAGGCTGCTTACAGAAAGCTGGCAAGAACGTATCATCCTGATGTTGTGGCCATGAATCAGAAGGAAAGCTCAGCTAACCAATTCATGATGATCCATTCAGCTTACTCTACATTGTCTGACCCAGAGAAGCGCGCTCAGTATGATAGAGAAATTTATAGACACAGAAGATCAGCAAATATTGCTTCCATGTCGGGAAGAAATCACACATTTTCCTATGCTGGAAGTGGAAGGAAATGGGAAACGGACCAATGTTGGTAG 315 0.4317 MASLYDVLGISMGASCVEIKAAYRKLARTYHPDVVAMNQKESSANQFMMIHSAYSTLSDPEKRAQYDREIYRHRRSANIASMSGRNHTFSYAGSGRKWETDQCW 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2965 104 PRINTS DnaJ domain signature 23 38 IPR001623 -
Ssu3g2965 104 PRINTS DnaJ domain signature 5 23 IPR001623 -
Ssu3g2965 104 PRINTS DnaJ domain signature 62 81 IPR001623 -
Ssu3g2965 104 PRINTS DnaJ domain signature 42 62 IPR001623 -
Ssu3g2965 104 Pfam DnaJ domain 4 67 IPR001623 -
Ssu3g2965 104 SUPERFAMILY Chaperone J-domain 2 74 IPR036869 -
Ssu3g2965 104 Gene3D DnaJ domain 1 89 IPR036869 -
Ssu3g2965 104 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 2 104 - -
Ssu3g2965 104 SMART dnaj_3 2 62 IPR001623 -
Ssu3g2965 104 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Ssu3g2965 104 CDD DnaJ 5 59 IPR001623 -
Ssu3g2965 104 ProSiteProfiles dnaJ domain profile. 3 70 IPR001623 -
Ssu3g2965 104 PANTHER - 2 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2965 Ssu-Chr3 84771927 84772241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2965 5 67 C2H2 Transcription Factor Family AT1G74250 44.776 9.96e-11 55.1