Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2957 ATGGGTACCACTACAACCTTTCTGCCTTGGACTGTTTCAACCACGAGCAAATGGTTGGGCTTCGTGGCGGCCGTTTGGATTCAATGCATCTCCGGCAACAACTACACTTTCTCGAACTACTCCGACGCTCTCAAATCCCTCATGCACCTCACACAGGTCCAGCTCAATAACCTCTCCGTCGCCAAAGACATTGGCAAAGCCTTTGGGCTCCTCGCCGGCCTCGCCTCCGACCGCTTCCCCATTTGGGCCATTCTCCTCATAGGCTCCGTCGAAGGCCTTATAGGCTACGGGGCCCAATGGCTCGTCGTTAGCCAGAGAATTCAGCCCCTTCCCTATTGGCAGATGTGCGTGTTTCTGTGCATGGGAGGCAACAGCACGACGTGGATGAACACTGCCGTTTTGGTCACTTGCATACGCAACTTTCGGACAAACAGAGGACCCGTCTCGGGGATTCTGAAAGGCTTCGTAGGGTTGAGCACTGCGATATTCACTAACCTCTGTTCCGCTCTCTTCGCCGACGACCCTGGCTCCTTCCTCATCATGCTCTCTGTGGTTCCCTTCGCCGTTTGCCTCACCGGCGTCTTCTTCCTCCGCGAGGTTTCTCCCTCCGCCGACGAAGACGGCGAAGAGGCCAAGTACTTCGGCGTCTTCAACGCCGTCGCCGTCGTGGTCGCGCTTTACCTGTTGGCGTATGGCTTCGTCCCCGGCCCCAGCACGGTGGTGTCTCGAGTGTTCGTCGCTATTTTGCTCGTTATGCTGGCTTCGCCGTTGGGGATTCCTGTGTACTCCTTCTTCAAGAGGAGGTGGAGAGCGGGGAACGACGTGGAGGGGCAGCGGGTGAACGATCCGTTGCTTCAGAGTCGGGAGAAGGAGAACGAGAGCGTGGCGGCGGcggaggtggtggtggaggaggcGGTGGCGGTGAAGCGGGCGCCGGTGGTGGGTGAGGAGCACACGATATTGGAGGCGCTGAGGAGCTTGGACTTTTGGATCTTGTTCGTGTCGTTTCTTTGCGGGGTTGGAACGGGTTTGGCGGTGATGAATAATATGGGTCAAATCGGGTTAGCGCTCGGATACCCAGATGTCTCGCTTTTTGTGTCGCTCACCAGTATTTGGGGCTTTTTTGGACGGATCGTCTCGGGTTCGGTTTCGGAGTTTACCATCAAGAAAGCTGCAACACCTAGACCCCTTTGGAATGCAGCATCTCAGCTTCTAATGGCTGTAGGTTACATACTCCTGGCCATGGCTATGCCTGGTTCCCTTTACATCGGGTCTATTTTAGTTGGCATATGTTATGGAGTGCGGCTTGCCATTACTGTCCCAACAGCCTCTGAGTTATTTGGACTCAAATATTATGGTCTCATCTACAATATTCTCATCCTTAACCTTCCCCTGGGCTCTTTCCTCTTCTCCGGGCTGCTTGCTGGCATACTGTATGATATGAAGGCAACAGCCACAGAGGGAGGAGGCAACACCTGTGTTGGAGGTCATTGTTACAGGCTAGTCTTTATAACCATGAGTGGAGCATCTATTGTTGGCTTCTTCTTAGACATTCTATTGTCAATCAGAACCAAGAATATTTACAACAAGATTTCCATGAGCAAGAAACCCAAGAAATCCTTAGCAACATCAAATAGCCAGTGA 1644 0.5243 MGTTTTFLPWTVSTTSKWLGFVAAVWIQCISGNNYTFSNYSDALKSLMHLTQVQLNNLSVAKDIGKAFGLLAGLASDRFPIWAILLIGSVEGLIGYGAQWLVVSQRIQPLPYWQMCVFLCMGGNSTTWMNTAVLVTCIRNFRTNRGPVSGILKGFVGLSTAIFTNLCSALFADDPGSFLIMLSVVPFAVCLTGVFFLREVSPSADEDGEEAKYFGVFNAVAVVVALYLLAYGFVPGPSTVVSRVFVAILLVMLASPLGIPVYSFFKRRWRAGNDVEGQRVNDPLLQSREKENESVAAAEVVVEEAVAVKRAPVVGEEHTILEALRSLDFWILFVSFLCGVGTGLAVMNNMGQIGLALGYPDVSLFVSLTSIWGFFGRIVSGSVSEFTIKKAATPRPLWNAASQLLMAVGYILLAMAMPGSLYIGSILVGICYGVRLAITVPTASELFGLKYYGLIYNILILNLPLGSFLFSGLLAGILYDMKATATEGGGNTCVGGHCYRLVFITMSGASIVGFFLDILLSIRTKNIYNKISMSKKPKKSLATSNSQ 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2957 547 SUPERFAMILY MFS general substrate transporter 17 526 IPR036259 -
Ssu3g2957 547 Gene3D MFS general substrate transporter like domains 289 538 IPR036259 -
Ssu3g2957 547 Gene3D MFS general substrate transporter like domains 11 274 IPR036259 -
Ssu3g2957 547 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 4-LIKE 11 541 - -
Ssu3g2957 547 Pfam Nodulin-like 17 261 IPR010658 -
Ssu3g2957 547 CDD MFS_Mch1p_like 16 513 - -
Ssu3g2957 547 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 11 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2957 Ssu-Chr3 84640880 84644719 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2957 17 540 Nodulin-like Gene Family AT4G34950 69.343 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2957 - - gmx:100800237 896.73