Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2956 ATGCGTAGAGTGATTGCGTTTCTCGTTCACCCACgattcctccttctcttccttgtTCTCTCAATTTTCCTCATTTTCACATTTTCTGGTTCGACAACTCCTAATGAACAAGTTGAGGTTGTTGAGGAGAAAATAGAAGAGGAGCCTGAAATTACACACAGAGTATTCTtggatattgatattgataaacAGCGTTTAGGTAGGATAGTGATTGGATTATATGGCCAAGTTGTACCGAAAACTGTGGAAAATTTTAGAGCTTTATGCACAGGGGAGAAAGGCAAGAGTGCAAATGGCATAAAGCTACGTTACAAAGGAACACCATTTCATCGGATAATATCTGGTTTTGTGATTCAGGGTGGAGACATTGTTCATCATGATGGCAAAGCGTCTGAATCTATTTATGGTGGCACCTTTCCTGATGAGAATTTCAAGATTAAACATTCTCATGCTGGCGTCGTCTCTATGGCAAATTCAGGACCTGATTCCAATGGCTCACAGTTTTTCATTACCACAGTGAAGGCCAGTTGGTTGGATGGAGAGCATGTTGTCTTTGGCAAGGTTGTTCAAGGCATGGATATTGTGTATGTAATTGAAGGGGGTGCTGGAACCTACAGTGGAAAACCCAGAAAGAAGGTAGTGATAGCAGACTCTGGGGAGATACCCAAGATCCACTGGGACGAGGAAAGTTGA 693 0.3997 MRRVIAFLVHPRFLLLFLVLSIFLIFTFSGSTTPNEQVEVVEEKIEEEPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGEKGKSANGIKLRYKGTPFHRIISGFVIQGGDIVHHDGKASESIYGGTFPDENFKIKHSHAGVVSMANSGPDSNGSQFFITTVKASWLDGEHVVFGKVVQGMDIVYVIEGGAGTYSGKPRKKVVIADSGEIPKIHWDEES 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2956 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 152 167 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 167 179 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 88 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 180 195 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 121 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 59 218 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 56 220 IPR002130 GO:0000413|GO:0003755
Ssu3g2956 230 SUPERFAMILY Cyclophilin-like 50 221 IPR029000 -
Ssu3g2956 230 Gene3D - 41 225 IPR029000 -
Ssu3g2956 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 230 - -
Ssu3g2956 230 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 29 230 - -
Ssu3g2956 230 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 104 121 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2956 Ssu-Chr3 84615485 84621390 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2956 67 218 U-box Gene Family AT5G67530 42.484 2.31e-26 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2956 - - gmx:100800775 410.994