Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2946 ATGGGAAGGTCTCCTTGCTGTGAGAAAGCTCACACAAACAAAGGTGCATGGACCAAAGAAGAAGATGACAGACTCATATCCTATATTCGAGCTCACGGTGAGGGCTGCTGGCGCTCCCTCCCCAAAGCCGCCGGCCTCCTCCGATGCGGCAAGAGTTGCCGTCTCCGGTGGATCAACTACCTCCGCCCCGACCTCAAACGTGGCAACTTCACCGAAGAAGAGGACGAACTCATCATCAAACTCCACAGTCTCCTCGGCAACAAGTGGTCTCTGATAGCGGGAAGATTGCCCGGGAGAACAGACAATGAAATAAAGAACTACTGGAACACTCACATAAGAAGGAAGCTTTTGAACAGAGGAATCGACCCTGCAACTCACAGGCCTCTTAACGaagctgctgctgctgctgctgctgtcACTAATATATCTCTTGGTAAACAAGAACAAGAGACAAGTTCTAGTAACGGAAGCGTTGTGAAAGGGTCCATCTTAGAACGTTGCCCTGACTTGAACCTTGACCTAACTATTAGTCCTCCTCGCCAACCTGAGAAGAACATGGAGAGAACCCTCTGCTTCGTTTGCAGTTTGGGTTTGCAGAACAGCAAGGATTGCAGCTGTAACGTTGCCAACGCTGTCACTCCCAACAACACCGCTTCTGCTTCTGCTTCTGCTGCTGCTTATGATTTCTTGGGCTTGAAAACCAACGGTGTTTGGGATTGCACCAGCTTggaaataatgaaatga 744 0.4704 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEAAAAAAAVTNISLGKQEQETSSSNGSVVKGSILERCPDLNLDLTISPPRQPEKNMERTLCFVCSLGLQNSKDCSCNVANAVTPNNTASASASAAAYDFLGLKTNGVWDCTSLEIMK 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2946 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Ssu3g2946 247 CDD SANT 69 112 IPR001005 -
Ssu3g2946 247 Gene3D - 68 137 - -
Ssu3g2946 247 CDD SANT 16 61 IPR001005 -
Ssu3g2946 247 Gene3D - 14 66 - -
Ssu3g2946 247 SMART sant 66 114 IPR001005 -
Ssu3g2946 247 SMART sant 13 63 IPR001005 -
Ssu3g2946 247 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Ssu3g2946 247 PANTHER MYB DOMAIN CLASS TRANSCRIPTION FACTOR 1 213 - -
Ssu3g2946 247 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 213 - -
Ssu3g2946 247 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Ssu3g2946 247 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Ssu3g2946 247 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Ssu3g2946 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Ssu3g2946 247 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2946 Ssu-Chr3 84489597 84490452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2946 1 245 MYB Transcription Factor Family AT4G34990 57.875 2.79e-105 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Ssu3g2946 Myb_DNA-binding 1.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2946 K09422 - gmx:780553 434.876