Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2936 ATGTTTGCAGGTGATTCTGCTGAGCAGAAGCTTGGGTGGCCTCTACTCCGGAGAGCCAATTCAGGAATCTCACAAGCCCTTCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACCTTACCAGATCGTTCACCACATAAAAGTCCTCGCTCTTCTTCCATTGAGGAAAACCCATTCCAAAGGGGCATCAACGATATTGACGATGAGAGCTCTAAAAATTCTTCACCTCCCTCTGTTGAGCTACCAAATGTCCTAGAGGAGATGTTAAACGTTAATTCACTCAATTGCAAGTGGTTCCGTCTTGAGGTTCTGAAGTCTTGCACTAGTCAATTCTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAGTCCTCCCTGGTGGAAAGCCAATCGCAGTTAAAGTATTGCAGTCATCAAAAGAAGCCCGGAAAGATTTTGCCCTTGAGGTGGAAATAATATCTTCATTGGAGCACAACAGCATTGCCCCTCTACTTGGGATTTGCATAGAGAACAATGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGCAGCTTAGAGGAAAATCTGCATGGAAAGAACAAGGATGGATCCATCTTGTCATGGGAAGTAAGATTTAATGTGGCTGTTAGGATCGCTGAAGCCCTTGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACATAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCGAGGGTTTGAACCACAATTGTCTGATTTCGGACTTGCAATATGGGGACCAACAACTTCATCCTTTTTGACACAAGATGTAGTAGGAACATTCGGCTATCTTGCTCCCGAATACTTCATGTATGGAAAGGTCAGTGACAAGATAGATGTCTATGCCTTCGGTGTAGTTCTACTTGAACTAATATCAGGAAAGGAACCAATCAGCTCCGCAGCTTGCAAAGGGCAGGAGAGCTTGGTGGTGTGGGCAAAACCAATAATAGACAGTGGGGATATTAAAGGCTTATTGGACCCAAATTTAGAAGGGAAATTTGATGAGGCCCAATTGCAAAGAATGGTTCTGGCAGCATCCTTATGCATCACACGGGCTGCTCGGCTCCGTCCAAAACTGAACCAGATACTGAAGATCctaaaaggagaagagaaaattgAACATTTCTTCAACTCCCATGAGGATGATCACGAGGATTCAGAAAATCAAGAAAACATTGATGACGAAGTGTATCCAAATTCAAGTGCAGAGTTGCACCTGAGTCTTGCATTACTTGGTGTTGACGATGACAGTACGTCACATAGTAGCACGGACCACAGCTATACTGAACACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTTAATTAG 1377 0.4285 MFAGDSAEQKLGWPLLRRANSGISQALHARDMSVVQWVMTLPDRSPHKSPRSSSIEENPFQRGINDIDDESSKNSSPPSVELPNVLEEMLNVNSLNCKWFRLEVLKSCTSQFSSENLVGKGGSNRVYKGVLPGGKPIAVKVLQSSKEARKDFALEVEIISSLEHNSIAPLLGICIENNALISVYDYFPKGSLEENLHGKNKDGSILSWEVRFNVAVRIAEALDYLHREALKPVIHRDVKSSNILLSRGFEPQLSDFGLAIWGPTTSSFLTQDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGKEPISSAACKGQESLVVWAKPIIDSGDIKGLLDPNLEGKFDEAQLQRMVLAASLCITRAARLRPKLNQILKILKGEEKIEHFFNSHEDDHEDSENQENIDDEVYPNSSAELHLSLALLGVDDDSTSHSSTDHSYTEHLKEQWSRSSSFN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2936 458 Pfam Protein kinase domain 114 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2936 458 Gene3D Transferase(Phosphotransferase) domain 1 187 400 - -
Ssu3g2936 458 Gene3D Phosphorylase Kinase; domain 1 80 186 - -
Ssu3g2936 458 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK7 ISOFORM X1 6 439 - -
Ssu3g2936 458 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Ssu3g2936 458 ProSiteProfiles Protein kinase domain profile. 112 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2936 458 MobiDBLite consensus disorder prediction 46 60 - -
Ssu3g2936 458 SMART serkin_6 112 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu3g2936 458 MobiDBLite consensus disorder prediction 434 448 - -
Ssu3g2936 458 MobiDBLite consensus disorder prediction 43 80 - -
Ssu3g2936 458 SUPERFAMILY Protein kinase-like (PK-like) 93 382 IPR011009 -
Ssu3g2936 458 MobiDBLite consensus disorder prediction 432 458 - -
Ssu3g2936 458 PANTHER OS08G0249100 PROTEIN 6 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2936 Ssu-Chr3 84348583 84351030 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2936 100 458 Trihelix Transcription Factor Family AT1G70460 38.082 2.79e-73 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Ssu3g2936 Pkinase 5.3e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2936 - - gmx:100789189 794.653
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2936 3 84348583 84351030 Ssu3g2936 3 84348583 84351030 ECH