Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2935 ATGGACGACGGCGAGCTCGATTTCTCGAACCAGGAGGTGTTTTCGAGCCCGAACATGGGCGAGCTTCCGAGCAGTGGTTCAATGGACAGTTTCTTCGACGAGCTTCTGAAAGACACGCACGCGTGCACGCACACCCACACGTGCAACCCTCCCGGGCCGGATTTTTCGCACACCCACACGTGCTACCACGTCCACACGAAAATCGTGCCCGCGCCCGCGGAGGACCAGGTTGCGACGGACGACACTGCTGAGTCTGCTGAGAAGAAATCGAAGAAGCGGCCCCTGGGGAACAAGGAAGCGGTTCGCAAGTACCGCGAGAAGAAGAAGGCTCGCGCGGCGTCGCTGGAGGACGAGGTCCTGAAGCTGAGGGCTCTGAACCAGCATTTGATGAAGAAGTTGCAGGGGCAGGCTGCGTTGGAGGCCGAGATTGCGAGGCTCAAGTGTTTGTTGGTGGACATAAGGGGGAGGATCGAAGGGGAGATTGGGTCGTTTCCGTATCAGAAATCGCCGAATACGAACCCCCCCGTGCCGAACCTGCCTGGCTCTTATGTGATGAACCCTTGCAACATGCAGTGTGATGATCGGGTGTATTGCCTTCACCCTGGAGCTGATGGGAAGATTGGGGAAAGTGCGGCGTTGAATGGGGAAGGATTTGGTGGCTGTGAATTTGAGAACCTGCAGTGTCTAGCTAGCCAGAATTTAGGCCTCAAGGATCTTCGCGCTTGTGGGGTTGGACAGACGGTGTCTAATGTAAATAcgtcaaataaaagaaaagGGGGATCTCGTGCAGCAACAGCTGgttga 804 0.551 MDDGELDFSNQEVFSSPNMGELPSSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAPAEDQVATDDTAESAEKKSKKRPLGNKEAVRKYREKKKARAASLEDEVLKLRALNQHLMKKLQGQAALEAEIARLKCLLVDIRGRIEGEIGSFPYQKSPNTNPPVPNLPGSYVMNPCNMQCDDRVYCLHPGADGKIGESAALNGEGFGGCEFENLQCLASQNLGLKDLRACGVGQTVSNVNTSNKRKGGSRAATAG 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2935 267 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Ssu3g2935 267 MobiDBLite consensus disorder prediction 1 25 - -
Ssu3g2935 267 MobiDBLite consensus disorder prediction 72 106 - -
Ssu3g2935 267 MobiDBLite consensus disorder prediction 81 103 - -
Ssu3g2935 267 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Ssu3g2935 267 Coils Coil 98 132 - -
Ssu3g2935 267 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Ssu3g2935 267 Gene3D - 76 153 - -
Ssu3g2935 267 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Ssu3g2935 267 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Ssu3g2935 267 MobiDBLite consensus disorder prediction 9 25 - -
Ssu3g2935 267 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Ssu3g2935 267 CDD bZIP 91 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2935 Ssu-Chr3 84342486 84344318 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2935 1 266 bZIP Transcription Factor Family AT2G16770 64.444 1.49e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2935 bZIP_2 3.5e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2935 K25785 - gmx:780549 459.914