Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2927 atGATGGGTATTCGTCTGCCGTTTATGGTTCATGCAAAACAGACATTCAAGTCGCATGTCAATGTTCCAAAGGGGCACGTGGCAGTGTATGTTGGAGAGTTGCAAAAGAAGAGGTTTGTGGTTCCAATATCATATTTGAACCATCCTTTGTTTCTTGATTTGCTAAACCGCGCAGAAGAAGAGTTTGGCTTCAATCATCCCATGGGGGGGCTCACAATTCCATGCAAAGAAGATGCTTTCATCAATCTTACCTCTCAACTCCGTGCCTTGTGA 273 0.4396 MMGIRLPFMVHAKQTFKSHVNVPKGHVAVYVGELQKKRFVVPISYLNHPLFLDLLNRAEEEFGFNHPMGGLTIPCKEDAFINLTSQLRAL 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2927 90 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 14 89 IPR003676 GO:0009733
Ssu3g2927 90 Pfam Auxin responsive protein 16 85 IPR003676 GO:0009733
Ssu3g2927 90 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR21-LIKE 14 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2927 Ssu-Chr3 84262449 84262721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2927 21 80 Calmodulin-binding Proteins AT5G20810 56.667 9.06e-17 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2927 K14488 - gmx:100803474 167.548