Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2926 ATGAAAACTGGTAACAGATTTGTTGGGATAGCTCATGCCAAGCAGAAACTCCAGAGAACTCTTTCACAAAGAATCAAAATGGCTTCAGCCATTGCTGATGTTCCAAAAGGCCACTTGGCAGTCTATGTTGGAGAGAACTATAAGAGGTTTGTAATTCCAATATCTTACCTAAGCCATCCTTTATTCAGAGACTTGTTGGATTGGGCTGAAGAAGAATTCGGATTCAATCACCCAATGGGTGGTCTCACTATTCCATGTACTGAAGATTACTTCATTAGTCTAACTACttctcttaattaa 300 0.3833 MKTGNRFVGIAHAKQKLQRTLSQRIKMASAIADVPKGHLAVYVGENYKRFVIPISYLSHPLFRDLLDWAEEEFGFNHPMGGLTIPCTEDYFISLTTSLN 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2926 99 Pfam Auxin responsive protein 23 97 IPR003676 GO:0009733
Ssu3g2926 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY 10 98 - -
Ssu3g2926 99 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 10 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2926 Ssu-Chr3 84236890 84237189 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2926 33 91 Calmodulin-binding Proteins AT5G20810 64.407 1.10e-20 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2926 K14488 - gmx:100781277 201.445