Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2922 ATGTCGCCGTCGACGGGGAACGGCAGCAAGATCCGGCGCATTGTCCGCGTGCGGCAGATGCTTCTCCGGTGGCGGAAGAAGGCGGTGTTGGCGGCGTCGGACGTTCCGGCGGGACACGTGGCGGTGTGCGTGGGGCCCAGCAGGAGGAGGTTCATCGTGCGCGCGACGTACCTGAACCACCCCATCTTCAAGATGCTTCTGGTGAAGGCGGAGGAGGAGTACGGGTTCTGCAACCACGGTCCTCTCGCTATTCCCTGCGACGAGTCTCTCTTCGAAGAGCTTCTGCTGGTCGTGGCCGGACCCGTGTCCGAGTTCTCCACGCTCGAGGATTTCCAGAGACGCTGCCACGTGGACGTACCGAGTACCTTTGATTTTGTAGGAGAATCGTGGCCGTTGCTTCGGGACGAGCCAATATGCTGA 420 0.619 MSPSTGNGSKIRRIVRVRQMLLRWRKKAVLAASDVPAGHVAVCVGPSRRRFIVRATYLNHPIFKMLLVKAEEEYGFCNHGPLAIPCDESLFEELLLVVAGPVSEFSTLEDFQRRCHVDVPSTFDFVGESWPLLRDEPIC 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2922 139 Pfam Auxin responsive protein 24 96 IPR003676 GO:0009733
Ssu3g2922 139 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 6 135 IPR003676 GO:0009733
Ssu3g2922 139 PANTHER SMALL AUXIN-UP RNA-RELATED 6 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2922 Ssu-Chr3 84072694 84073113 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2922 6 133 Calmodulin-binding Proteins AT4G34750 51.748 3.25e-41 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2922 K14488 - gmx:100795345 234.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2922 3 84072694 84073113 Ssu3g2922 3 84072694 84073113 ECH