Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2921 ATGGCCGCATTAGCCCCCGCTCTGTCCTCGTCCACTCTCTCCAAACCCTCCCCTCCCCCTTTCCGCACTCACCCTTTCACCAGAGCCCTCCCAATACTGCTCCCTCGCCCCGCCTTCAAAACCCCCTTCCTCGCGTCCTCCAAAAACCCGATTTCCGATATCACCGTCCCCGCCAGCGCGTACGAGGAGGAGAAGCCGCGCGAGGAGTGCGGCGTGGTGGGCATATACGGCGACCCGGAGGCCTCGCGGCTCTGCTACCTGGCCCTCCACGCGCTCCAGCACCGCGGCCAGGAGGGCGCCGGCATCGTCGCCGTCCACAGCAACGTTCTCCAGTCCGTCACCGGCGTCGGCCTCGTCTCCGACGTCTTCAACGAGTCCAAGCTCGACCAGCTCCCCGGCAGCCTGGCCATCGGCCACGTCCGCTACTCCACCGCCGGGCAGTCCATGCTCAAGAACGTCCAGCCCTTCGTCGCCGGGTACCGCTTCGGCTCCGTCGGCGTGGCCCACAACGGCAACCTCGTCAACTACTGCACCCTCAGGACCACCCTCGAGGACAACGGCTCCATCTTCAACACCACCTCCGACACCGAGGTGGTCCTCCACCTCATCGCCACCTCCAAGCACAGACCCTTCATACTTAGAATCGTCGACGCCTGCGAGAAGCTCGAAGGGGCTTACTCCATCGTCTTCGTCACCGAGGACAAGCTCGTCGCCGTGCGCGACCCGTTTGGGTTCAGGCCTCTCGTCATGGGGAGGAGAAGCAACGGCGCCGTTGTTTTCGCCTCTGAAACCTGCGCGCTTGATTTAATCGAAGCCACGTACGAGAGAGAGGTTTACCCCGGCGAGGTTCTCGTGGTGGATAAAAACGGGGTTCAGAGTCTTTGCCTCATGTCTCACCCGCAACCGAAGCAGTGTATCTTCGAGCATATTTACTTTGCGCTGCCCAATTCGGTTGTTTTCGGGAGGTCCGTGTACGAGTCTCGCAGACAATTCGGGGAGATTCTGGCCACCGAGAGTCCCGTGGAGTGTGACGTTGTGATAGCGGTTCCTGATTCTGGGGTTGTTGCCGCGCTTGGTTACGCTGCCAAAGCTGGGGTTCCGTTTCAGCAGGGTTTGATTCGGTCGCACTATGTGGGGAGGACCTTCATTGAGCCTTCTCAGAAGATTAGGGACTTTGGCGTGAAGCTGAAGCTCTCGCCCGTGCGTGCCGTGCTGGAGGGCAAGAGAGTTGTGGTGGTGGATGATTCCATTGTGAGAGGAACCACCTCGTCCAAGATAGTTAGGTTGTTGAAGGAGGCTGGGGCTAAGGAGGTTCACATGAGGATTGCGAGTCCTCCGATTATTGGGTCTTGTTATTATGGGGTGGACACGCCCAGTTCTGAGGAGTTGATTTCCAACAGGATGAGTGTGGAGGAGATAAGGGAGTTCATTGGGTCGGACTCCCTTGCGTTTTTGCCGTTCGATAGCTTGACGAGGTTGTTGGGGAATGAGAGTCCGAATTTCTGTTATGCTTGTTTCTCCGGGAATTACCCTGTGGAGCCCAGGGAGCTTAAGGTGAAGAGGGTTGGGGACTTCGTGGACGATGGCTTGAATGGGAGCTTGGAGTCTATTGATGGGGGTTGGGTGCAAGCGAACCGGAACCAAATCAAGTGTTAA 1656 0.5851 MAALAPALSSSTLSKPSPPPFRTHPFTRALPILLPRPAFKTPFLASSKNPISDITVPASAYEEEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVAVHSNVLQSVTGVGLVSDVFNESKLDQLPGSLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNLVNYCTLRTTLEDNGSIFNTTSDTEVVLHLIATSKHRPFILRIVDACEKLEGAYSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAVVFASETCALDLIEATYEREVYPGEVLVVDKNGVQSLCLMSHPQPKQCIFEHIYFALPNSVVFGRSVYESRRQFGEILATESPVECDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIASPPIIGSCYYGVDTPSSEELISNRMSVEEIREFIGSDSLAFLPFDSLTRLLGNESPNFCYACFSGNYPVEPRELKVKRVGDFVDDGLNGSLESIDGGWVQANRNQIKC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2921 551 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 43 542 - -
Ssu3g2921 551 PIRSF Pur1 66 524 IPR005854 GO:0004044|GO:0009113
Ssu3g2921 551 Pfam Phosphoribosyl transferase domain 341 439 IPR000836 -
Ssu3g2921 551 TIGRFAM purF: amidophosphoribosyltransferase 70 511 IPR005854 GO:0004044|GO:0009113
Ssu3g2921 551 CDD PRTases_typeI 332 443 IPR000836 -
Ssu3g2921 551 CDD GPATase_N 70 320 IPR035584 -
Ssu3g2921 551 Pfam Glutamine amidotransferase domain 148 267 IPR017932 -
Ssu3g2921 551 Hamap Amidophosphoribosyltransferase [purF]. 69 510 IPR005854 GO:0004044|GO:0009113
Ssu3g2921 551 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 70 511 IPR029055 -
Ssu3g2921 551 Gene3D - 329 493 IPR029057 -
Ssu3g2921 551 MobiDBLite consensus disorder prediction 1 21 - -
Ssu3g2921 551 SUPERFAMILY PRTase-like 305 516 IPR029057 -
Ssu3g2921 551 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 70 293 IPR029055 -
Ssu3g2921 551 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 70 289 IPR017932 -
Ssu3g2921 551 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 2, CHLOROPLASTIC 43 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2921 Ssu-Chr3 84052228 84053950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2921 62 543 PRT Gene Family AT2G16570 85.950 0.0 853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2921 K00764 - gmx:100801720 983.786
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2921 3 84052228 84053950 Ssu3g2921 3 84052228 84053950 ECH