Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2920 ATGGGTGATAATGAAGAAGCGACGAATGACTTGATGCAGAGGTTTCACTGTTCCTCGTTTCTGAAGCAGCCACTGAACATGGAGCAACTGAGCATCCCGCAATTCAACGCGTCGCAAATGCGCGCGAGGCATCAGCATCAGCATCATCTGTTTCCGCAGAGTTTGGGAGGCGGAGAGGGTGGAAACAATAACAAACGCGCCGGCATACCACCTTCGCACCCGCACCAGATCCCGCCCATTTCGCCGTACTCTCAGATCCCGGTGTCGCGTCAGCAGCAAATGGGGTCGCACAACATTTCCCCTACGCCCACGCACACGCGATCACTCTCGCAACCCTCGTTTTTCTCGCTCGATTCCCTCCCCCCGCTCAGTCCCTCCCCCTTCCGCGACTCCTCCTCGACGTCCGTGTCCGAAGCTGCTGACGTGTCAATGGAAGATCGCGACGTGAGTTCGCATTCACTGTTGCCACCCTCGCCTTTCTCCAGAGCACTCACCACCAACAACAGCAATTTACCTTTACCTCCTCGCAAAGCGCACAGGCGCTCTAACAGTGATATCCCGTTCGGGTTTTCCACCGTTTTGCAGTCTTCGCCGCCGCTTATTCCTCTACGGGGAAGAGAGAGCCCCGTTTTGGCGAAACCTGCTCAGCTGGTGAAACGGGAAACACCGTGGGACAGGGGTGTTGACCATAGTAATGTGGAGGGGTCCGGGGAGAAGAAATCCCCTGAAGGGGAAGTGGTGGATGATCTATTCTCTGCTTACATGAATTTGGATAGCTTTGATGCGTTGAACTCTTCCGGGACCGATGATAAGAACGGGACCGAAAATCGCGATGATTTGGATAGTAGGGCGAGTGGGAGTAAGACTAATGGTGGTGACAGCAGTGATAATGAAGCTGAAAGCAGTGTTAACGAGAGTGGGGACGGTGTGGTGAGGCAAGGAGCGAGTGAGAAGAGGGAAGGGATGAAGAGGAGTGCGGGGGGTGAGATTGCACCCACCACCAGGCACTATAGGAGTGTGTCCATGGATAGTTTCATTGGGAAGTTGAACTTTGGCGATGAGTCGCCGAAGCTGCCGCCTTCGCCGGGGCCGAGAACCGGCTTGATTTCGCCGGCCAATGCAATGGATGGAAACTCAACGGCCTTCAGCTTGGAGTTTGGAAATGGGGAGTTTAGTGGGcctgaattgaagaaaattatggCCAATGAAAAACTTGCTGAGATTGCCATGACCGATCCAAAGCGCGCGAAAAGGATTTTGGCCAATAGGCAATCGGCTGCGCGATCCAAAGAGCGGAAGATGCGGTACATTTCGGAGCTAGAACACAAGGTTCAGACTCTACAGACGGAAGCCACCACACTATCTGCACAGCTTACTCTGTTACAGAGAGATTCGGCTGGACTCACTAACCAGAATAGTGAGTTGAAGTTTCGCCTTCAATCCATGGAACAACAAGCAAAGCTCCGAGATGCTCTAAATGAGGCGCTTACTGCTGAGGTTCAAAGACTAAAGCTTGCTACTGCTGAACTGAGTGGGGATTCGCATGCTTCTAGCTGTTTGATTCCTCAACATTCTGTCAATCCTCTGATGTTCCAGCACCAGCAGCAGCCTCCTACGGCATCCCAACAAAACATTCATCTTCGACAGCAACAGCAGCAGCAGAATGGAAATGTCAACTCAAACACCGACTTAAAACAATAG 1701 0.5197 MGDNEEATNDLMQRFHCSSFLKQPLNMEQLSIPQFNASQMRARHQHQHHLFPQSLGGGEGGNNNKRAGIPPSHPHQIPPISPYSQIPVSRQQQMGSHNISPTPTHTRSLSQPSFFSLDSLPPLSPSPFRDSSSTSVSEAADVSMEDRDVSSHSLLPPSPFSRALTTNNSNLPLPPRKAHRRSNSDIPFGFSTVLQSSPPLIPLRGRESPVLAKPAQLVKRETPWDRGVDHSNVEGSGEKKSPEGEVVDDLFSAYMNLDSFDALNSSGTDDKNGTENRDDLDSRASGSKTNGGDSSDNEAESSVNESGDGVVRQGASEKREGMKRSAGGEIAPTTRHYRSVSMDSFIGKLNFGDESPKLPPSPGPRTGLISPANAMDGNSTAFSLEFGNGEFSGPELKKIMANEKLAEIAMTDPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSAGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKLATAELSGDSHASSCLIPQHSVNPLMFQHQQQPPTASQQNIHLRQQQQQQNGNVNSNTDLKQ 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2920 566 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 412 475 IPR004827 GO:0003700|GO:0006355
Ssu3g2920 566 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 80 561 - -
Ssu3g2920 566 SMART brlzneu 410 474 IPR004827 GO:0003700|GO:0006355
Ssu3g2920 566 Gene3D - 413 466 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 38 184 - -
Ssu3g2920 566 CDD bZIP_plant_RF2 415 466 IPR044759 GO:0003700|GO:0006355
Ssu3g2920 566 MobiDBLite consensus disorder prediction 212 244 - -
Ssu3g2920 566 SUPERFAMILY Leucine zipper domain 414 465 IPR046347 GO:0003700|GO:0006355
Ssu3g2920 566 MobiDBLite consensus disorder prediction 263 336 - -
Ssu3g2920 566 Pfam bZIP transcription factor 414 472 IPR004827 GO:0003700|GO:0006355
Ssu3g2920 566 PANTHER ZIPPER TRANSCRIPTION FACTOR FAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED 80 561 - -
Ssu3g2920 566 Coils Coil 430 485 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 82 140 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 154 173 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 532 566 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 351 374 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 285 309 - -
Ssu3g2920 566 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2920 Ssu-Chr3 84029836 84033289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2920 1 533 bZIP Transcription Factor Family AT4G38900 57.914 0.0 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu3g2920 bZIP_1 2.1e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2920 - - gmx:780560 828.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2920 3 84029836 84033289 Ssu3g2920 3 84029836 84033289 ECH