Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2917 atggTTTTTTACCCTCCACACTGTACGGTAACGGAGATCGGAACGTGTAACTTCTCTTTGTGGGAACCGGAATATCTCACTTCTCAGATCAGATCAGATCTATTCGACGTCGTTGCAGTGGTAATGGCTCCGTTCAGCGGCGATGAGACGGCACCGTTTTTCGGCTTCCTTGGAGCCGCAGCTGCCCTCGTCTTCTCCTGCATGGGAGCTGCCTATGGCACAGCGAAGAGTGGCGTGGGCGTGGCTTCGATGGGTGTGATGAGACCGGAGCTGGTGATGAAGTCTATTGTCCCTGTTGTTATGGCTGGAGTTTTGGGTATTTATGGCCTTATTATTGCTGTTATAATCAGTACTGGCATTAATCCCAAAGCCAAATCTTATTACCTCTTTGATGGTTATGCGCATCTCTCCTCTGGTCTTGCCTGCGGGCTGGCTGGGCTCTCTGCTGGCATGGCTATTGGTATTGTTGGTGATGCTGGTGTTAGAGCCAATGCACAGCAACCAAAACTTTTTGTTGGAATGATTCTCATCCTTATCTTTGCTGAAGCTCTTGCTCTGTATGGTCTCATTGTTGGTATTATCCTGTCTTCTCGTGCTGGTCAGTCTAGAGCTGATTAA 618 0.4838 MVFYPPHCTVTEIGTCNFSLWEPEYLTSQIRSDLFDVVAVVMAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2917 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 174 197 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g2917 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 96 120 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g2917 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 70 94 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g2917 205 PRINTS Vacuolar ATP synthase 16kDa subunit signature 147 173 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu3g2917 205 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 44 205 - -
Ssu3g2917 205 Pfam ATP synthase subunit C 57 116 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu3g2917 205 Pfam ATP synthase subunit C 137 195 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu3g2917 205 TIGRFAM V_ATP_synt_C: V-type ATPase, C subunit 53 161 IPR011555 GO:0033179|GO:0046961|GO:1902600
Ssu3g2917 205 CDD ATP-synt_Vo_c_ATP6C_rpt2 129 196 - -
Ssu3g2917 205 SUPERFAMILY F1F0 ATP synthase subunit C 127 196 IPR035921 -
Ssu3g2917 205 SUPERFAMILY F1F0 ATP synthase subunit C 54 117 IPR035921 -
Ssu3g2917 205 CDD ATP-synt_Vo_c_ATP6C_rpt1 53 120 - -
Ssu3g2917 205 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 44 205 - -
Ssu3g2917 205 Gene3D - 51 202 IPR035921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2917 Ssu-Chr3 83992905 83994275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2917 42 205 Primary Pumps ATPases(2) AT2G16510 98.171 4.36e-110 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2917 K02155 - gmx:100812380 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2917 3 83992905 83994275 Ssu3g2917 3 83992905 83994275 ECH