Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2899 ATGGAAGTCGCGGCGGCGAAGGCGCTGAAACCAAGCTTGCGGACAGAGTTTGTTTTCTCGCAAGCAATATGCGACGAGTTTTTGTGTTTTAACGCGAACAATATTGTTGTCGGTGAAGATTTCTCCGTGGACGACCTCCTTGACTTTTCCAACGGCGTTGGAAAAGAATTTGATGACTACGAGGACGAGGAAAAAGACAGCACCTCAGGTTCCTCACAGTCGCAGGACCGAACAGAAGACGACAGCAACTCTAATTCCACCGCCGGAGGCGGCGACTCCGTTTTCGCCGGTGAATTGTCGGTTCCAGCGGATGATGTGGCGGACCTGGAGTGGGTTTCTCACTTCGTCGACGATTCTCTCCCGGAGCTATCTCTATTGTACCCCGTCCGTTCCGAGGAGCGAACAAGGGTATGGGCCGAACCGGAACCTAGACCGGGCCCAGCCCAAACCCTCTCAGCAATCCCCAGAAGGCGGAGAACCGTAAAGACCAGAAAGGCCAACACTCGTGTCTGGTCCTTTTCGCCCTCGCCGTCGTCTTTGAGTTCTTCGGTGTCGGCTGGCTCTGTTGAGTTTGGCGAGCCGGCGGCTAAGAAGCAGAAGAAAAAGGCCGAGGCCCAAACCGGCGGGGCCCAGTTTCTGCGACGGTGCGGCCACTGCCAGGTGCAGAAAACGCCGCAGTGGAGGACCGGCCCACTGGGCCCCAAAACGCTTTGCAACGCTTGCGGGGTTCGGTTTAAGTCCGGTCGGCTTTTTCCAGAGTATAGACCGGCCTGCAGCCCAACTTTCTCCGGCGATATTCACTCGAACAGTCATCGTAAAGTGTTGGAGATGAGGCGGAGAAAGGAGATGGCTGGACCAGCGACCGGTTCGGACCGGACCCAAATGGTCCCgagttgctga 900 0.5611 MEVAAAKALKPSLRTEFVFSQAICDEFLCFNANNIVVGEDFSVDDLLDFSNGVGKEFDDYEDEEKDSTSGSSQSQDRTEDDSNSNSTAGGGDSVFAGELSVPADDVADLEWVSHFVDDSLPELSLLYPVRSEERTRVWAEPEPRPGPAQTLSAIPRRRRTVKTRKANTRVWSFSPSPSSLSSSVSAGSVEFGEPAAKKQKKKAEAQTGGAQFLRRCGHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGRLFPEYRPACSPTFSGDIHSNSHRKVLEMRRRKEMAGPATGSDRTQMVPSC 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2899 299 PIRSF Txn_fac_GATA_plant 1 298 IPR016679 GO:0003677|GO:0005634|GO:0045893
Ssu3g2899 299 PANTHER GATA TRANSCRIPTION FACTOR 1 299 - -
Ssu3g2899 299 MobiDBLite consensus disorder prediction 71 91 - -
Ssu3g2899 299 Pfam GATA zinc finger 216 249 IPR000679 GO:0006355|GO:0043565
Ssu3g2899 299 ProSitePatterns GATA-type zinc finger domain. 216 241 IPR000679 GO:0006355|GO:0043565
Ssu3g2899 299 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 271 - -
Ssu3g2899 299 ProSiteProfiles GATA-type zinc finger domain profile. 214 246 IPR000679 GO:0006355|GO:0043565
Ssu3g2899 299 Gene3D - 212 285 IPR013088 GO:0006355|GO:0008270
Ssu3g2899 299 MobiDBLite consensus disorder prediction 55 97 - -
Ssu3g2899 299 PANTHER GATA TRANSCRIPTION FACTOR 1 299 - -
Ssu3g2899 299 CDD ZnF_GATA 215 272 IPR000679 GO:0006355|GO:0043565
Ssu3g2899 299 SMART GATA_3 210 264 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2899 Ssu-Chr3 83835999 83836981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2899 40 287 C2C2-Gata Transcription Factor Family AT4G36240 44.569 1.13e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu3g2899 GATA 1.6e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2899 - - gmx:100776188 439.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2899 3 83835999 83836981 Ssu3g2899 3 83835999 83836981 ECH