Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu3g2885 ATGAAGATCCAGTGTGATGTGTGTCACAAAAAAGTGGCCTCCTTGTTCTGCACTGCAGATGAAGCAGCTCTCTGCCATGCTTGTGATCGCACCATCCACCATGCCAACAAGCTCGCAGACAAACACAAACGCTTCTCTCTTCACCACCCCACCTCCAAAGACACCCCTCTTTGTGATATCTGTCATgAGAGGCGTGCATATGTTTTTTGCAAAGAGGACAGAGCAATACTCTGCAGAGAATGTGACCTTTCTATTCATGGGGTCAACGAACATACCAAGAAACACAATAGGTTTCTTCTCGCTGGTGTAAAGATCGGTGCTGCTTCTTCAGACCCAACATCATTAATTTCCTCGAATACCACTGCCACTGAAGTAAGAGCAACCTCTCGTTCTAAAACAAACAGACCAAGTTCATTATTCTCAAATGAAAATATTGGTTCTTCTCGCACGGTTGGAGACAACTTGGCTTGTGACACGGGTTCGGTTTCAACAAGCAGCATTTCTGAGTACTTGATTGAGACAATTCCCGGTTACTGCGTGGAAGACCTTCTAGATGCGTCATTTGCATCTAATGGTTTCTCTAAGGATTATGAGCACCAATCAGCGTTTCAGAACCAAGATGTTCAAGTCAGCATGTGTTCGTTCCCACTGCAAGCGTGGGTCCCACAATCTCAAGCTGGATCCCCTCAACTTAGCACTACTTCGAATCTTCATCCCCAGATTGATTCTTTAATTGGAGTTATGGAAATGCCTAAAGCCATAGCTGGTGAAGGATACTCCACTTGGAAATATAATTATGACTACGATGTTCCTTCGATTAGTCCTCCACTGATCAAAAAATGTAGACGCTCTCGTTAA 858 0.4417 MKIQCDVCHKKVASLFCTADEAALCHACDRTIHHANKLADKHKRFSLHHPTSKDTPLCDICHERRAYVFCKEDRAILCRECDLSIHGVNEHTKKHNRFLLAGVKIGAASSDPTSLISSNTTATEVRATSRSKTNRPSSLFSNENIGSSRTVGDNLACDTGSVSTSSISEYLIETIPGYCVEDLLDASFASNGFSKDYEHQSAFQNQDVQVSMCSFPLQAWVPQSQAGSPQLSTTSNLHPQIDSLIGVMEMPKAIAGEGYSTWKYNYDYDVPSISPPLIKKCRRSR 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu3g2885 285 SMART bboxneu5 4 47 IPR000315 GO:0008270
Ssu3g2885 285 SMART bboxneu5 53 100 IPR000315 GO:0008270
Ssu3g2885 285 Pfam B-box zinc finger 56 93 IPR000315 GO:0008270
Ssu3g2885 285 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Ssu3g2885 285 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Ssu3g2885 285 CDD Bbox1_BBX-like 57 100 - -
Ssu3g2885 285 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 206 - -
Ssu3g2885 285 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 206 - -
Ssu3g2885 285 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Ssu3g2885 285 CDD Bbox1_BBX-like 5 47 - -
Ssu3g2885 285 Gene3D Classic Zinc Finger 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu3g2885 Ssu-Chr3 83617570 83618792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu3g2885 1 285 C2C2-CO-like Transcription Factor Family AT1G75540 38.973 2.09e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Ssu3g2885 zf-B_box 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu3g2885 - - gmx:100790232 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g2885 3 83617570 83618792 Ssu3g2885 3 83617570 83618792 ECH